What's New on PhysioNet?

WFDB Software Package
Over 70 open-source applications for signal processing, analysis, and more, all built on a stable and easy-to-use library that can be incorporated into your own software. Latest update: Thursday, 28 May 2015 (summary here).
25 November 2015
The kl-single-uncentralized subdirectory contains another new set of single lead KL basis functions for the ST segments, and their subsequent normalized and non-normalized KL coefficients. The set of clean heart beats from which the ST segments are extracted slightly differ from those of the previously derived 2011 KL dataset. More importantly, this time the KL coefficients are not centralized by their mean values.
9 November 2015
Data Chromatix is a technique for visualizing trends in biomedical signals by bringing memory of the system's past behavior into the current display window. This package was developed at the Wyss Institute at Harvard by A. Burykin, S. Mariani, T. Silva and T. Henriques, and is described in "Remembrance of time series past: simple chromatic method for visualizing trends in biomedical signals," Burykin A, Mariani S, Henriques T, Silva TF, Schnettler WT, Costa MD, Goldberger AL. Physiol Meas 2015;36(7):N95.
9 November 2015
ECG-kit This toolbox is a collection of MATLAB tools that Mariano Llamedo Soria used, adapted or developed during his PhD and post-doc work with the Besicos group at University of Zaragoza, Spain and at the National Technological University of Buenos Aires, Argentina. The main feature of this toolbox is that it allows the use of several popular algorithms for ECG processing, including: Algorithms from Physionet's WFDB software package; QRS detectors, such as gqrs, wqrs, wavedet, ecgpuwave, Pan & Tompkins, EP limited; Wavelet-based ECG delineator; Pulse wave detectors as wabp and wavePPG; and a2hbc and EP limited heartbeat classifiers.
19 May 2015
Smart Health for Assessing the Risk of Events via ECG (SHAREE database). The SHAREE database was developed in order to investigate the possibility of identifying hypertensive subjects at higher risk to develop vascular events based on Heart Rate Variability analysis. The database was created by Paolo Melillo, Raffaele Izzo, Ada Orrico, Paolo Scala, Marcella Attanasio, Marco Mirra, Nicola De Luca, and Leandro Pecchia as part of the “Smart Health and Artificial intelligence for Risk Estimation” (SHARE) project, which seeks ways to prevent cardiovascular events and falls in people over 65.
9 May 2015
Icelandic 16-electrode Electrohysterogram DataBase (EHGDB). A new dataset of 122 16-electrode EHG recordings performed on 45 pregnant Icelandic women has been published in PhysioBank. The data was contributed by Ásgeir Alexandersson, who performed the recordings at Akureyri Primary Health Care Centre, Akureyri Hospital and Landspitali University Hospital. A detailed description of the database has been published in Nature's new journal Scientific Data 2, Article number: 150017 (2015).
14 February 2015
The PhysioNet/Computing in Cardiology Challenge 2015 is now open. This year's challenge is 'Reducing False Arrhythmia Alarms in the ICU'. False alarms in the ICU can lead to a disruption of care, impacting both the patient and the clinical staff through noise disturbances, desensitization to warnings and slowing of response times, leading to decreased quality of care. To address this issue, competitors are challenged to devise a method of processing all the available data to reduce false alarms with minimal or no effect on true (vital) alarms.
31 January 2015
Two new software packages have been added to PhysioToolkit! The first package, D3Maps, is a tool for visualizing the behavior of complex systems by means of the dynamical density delay mapping technique. This package was developed at the Wyss Institute by A. Burykin, L. Citi, M.D. Costa and A.L. Goldberger. The second software package, Multiscale Multifractal Analysis, is a time series analysis method designed to describe scaling properties of fluctuations within a signal. The software package was contributed by Jan Gierałtowski from Warsaw University of Technology.
22 January 2015
PhysioNet is pleased to announce that we are now an officially recommended repository for the journal Scientific Data (SciData). SciData is an open-access, peer-reviewed publication from the Nature Publishing Group focusing on scientifically valuable research datasets. SciData's primary article-type, the Data Descriptor, is designed to make your data more discoverable, interpretable and reusable. Users who have contributed data to PhysioNet are now invited to submit their unpublished data as a Data Descriptor to Scientific Data! Pre-submission enquires are welcome at scientificdata@nature.com.
12 December 2014
NEW DATABASE ADDED: Combined measurement of ECG, Breathing, and Seismocardiograms Database (CEBSDB). A dataset of 60 records from 20 volunteers has been contributed to PhysioBank by Miguel Angel Garcia Gonzalez and Ariadna Argelagos Palou from the Universitat Politecnica de Catalunya. Each record contains two ECGs, a respiration, and a seismocardiogram signals. The database was designed to check if errors in RR series are influenced by breathing, and if there is a significant variability in RR series estimated from ECGs versus seismocardiograms.
3 November 2014
Two new software packages have been added to the PhysioTookit library. FECGSyn is a new Foetal ECG Waveform Generator contributed by Joachim Behar and colleagues in Gari Clifford's group at the University of Oxford. The second package, the Random Search Toolbox, is a MATLAB toolbox for selecting model hyper-parameters via random search, also contributed by Joachim Behar and colleagues in Gari Clifford's group.
4 April 2014
PhysioNet users with an interest in sleep physiology now have access to the web site of the National Sleep Research Resource (NSRR), which hosts large annotated collections of EDF polysomnograms and related clinical data elements from well-characterized research cohorts and clinical trials. The first data set available includes over 8,000 studies from exams 1 and 2 of the Sleep Heart Health Study, with scheduled new data releases every quarter from additional data sets. NSRR also provides open-source software for viewing and analyzing these data.
6 March 2014
The ECG-ID Database is a set of 310 ECGs from 90 volunteers, created and contributed to PhysioBank by Tatiana Lugovaya, who used the data in her master's thesis on the topic of biometric human identification using the ECG. An excellent summary of this thesis, with a discussion of the challenges in using ECGs as biometrics, and a comparison of the author's methods and results with those of three previous studies, is also available.
4 March 2014
A set of high-resolution multichannel EEG recordings — created and contributed by Luca Citi, Riccardo Poli, and Caterina Cinel — was generated as part of a study aimed at identifying the factors limiting the performance of brain-computer interfaces (BCIs) based on event-related potentials (ERPs), in order to improve the transfer rate and the usability of these interfaces. Twenty recordings of each of 10 participants include annotated 64-channel EEGs and 4-channel EOGs, generated while the participants focused on specified target characters displayed by a traditional matrix speller.
3 March 2014
A collection of motion artifact contaminated fNIRS and EEG data has been contributed to PhysioBank by Kevin Sweeney and colleagues at the National University of Ireland in Maynooth. The data set contains examples of functional near-infrared spectroscopy (fNIRS) and electroencephalogram (EEG) recordings that have been created for evaluating artifact removal methods. In each such recording, one or two pairs of similar physiological signals have been acquired from transducers in close proximity. One signal of each pair is contaminated by motion artifact, documented in each case by simultaneously recorded outputs of 3-axis accelerometers affixed to each transducer.
18 February 2014
The CTU-UHB Intrapartum Cardiotocography Database, from the Czech Technical University (CTU) in Prague and the University Hospital in Brno (UHB), contains 552 cardiotocography (CTG) recordings, which were carefully selected from 9164 recordings collected between 2010 and 2012 at UHB. The CTG recordings start no more than 90 minutes before actual delivery, and each is at most 90 minutes long. Each CTG contains a fetal heart rate (FHR) time series and a uterine contraction (UC) signal, each sampled at 4 Hz. Each CTG is accompanied by maternal, delivery, and fetal clinical details.
30 January 2014
A contribution of simulated fetal phonocardiograms is now available in PhysioBank. The synthetic PCGs exhibit a realistic range of signal-to-noise ratios, with simulated maternal heart and organ sounds, fetal movements, and environmental sounds.
7 January 2014
The 15th annual PhysioNet/CinC Challenge, Robust Detection of Heart Beats in Multimodal Data, is now underway. Read the first announcement, and study the training data set and a sample entry.

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Updated Wednesday, 25 November 2015 at 16:28 EST

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