Resources

57 resources

Software Open Access

augsig: A Python Package for Physiological Signal Augmentation

Davood Fattahi, Xiao Hu

The augsig package augments physiological signals such as PPG and ECG. It provides noise injection, time warping, amplitude modulation and drift, burst artifacts, low-frequency noise, sinusoidal interference, temporal flip, and amplitude inversion.
signal augmentation amplitude drift artifact simulation noise injection physiological signal processing time warping amplitude modulation
Published: Oct. 6, 2026. Version: 0.2.0
Software Open Access

Automated Detection and Removal of Pacing Artifacts from ECG Signal

Rajkumar Dhar, Shivangi Kewalramani, Larisa Tereshchenko

The software application (written in MATLAB) automatically detects pacing spikes (pacing artifacts) on a 12-lead ECG signal and automatically removes them. User-friendly GUI permits reviewing the results and adjusting settings to achieve perfection.
artifact cardiac pacing digital signal processing electrocardiogram
Published: April 24, 2026. Version: 1.0.0
Software Open Access

Digital Data Real-Time Ingestion Utility

Shivangi Kewalramani, Hayden Caldwell, Larisa Tereshchenko

Schema-only database for a patient's digital signal data (e.g., ECG) collection using a novel or investigational device. Key features include real-time linkage between digital physiological recordings and their corresponding metadata.
empty database reliability bedside digital signal collection quality control schema-only database real-time recording
Published: March 25, 2026. Version: 1.0.0
Software Open Access

Vital File Web Viewer: A Browser-Based Tool for Viewing High-Resolution Vital Signs Data

Eunsun Rachel Lee, Hyung-Chul Lee

A standalone, browser-based viewer for .vital files that enables interactive visualization of high-resolution vital signs data without server-side components.
vitaldb vital file
Published: Sept. 1, 2025. Version: 1.0.0
Software Open Access

Software for computing Heart Rate Fragmentation

Madalena Costa

Heart rate fragmentation: a new method for the analysis of cardiac interbeat interval time series. The code provided can be run in Windows, Mac and Linux machines.
heart rate variability aging cardiovascular disease vagal tone time series analysis prediction of atrial fibrillation cardiac autonomic function prediction of cardiovascular events prediction of cognitive decline heart rate fragmentation
Published: Feb. 14, 2024. Version: 1.0.0
Software Open Access

Transformer-DeID: Deidentification of free-text clinical notes with transformers

Callandra Moore, Lucas Bulgarelli, Tom Pollard, et al.

Fine tune transformer-based neural networks to deidentify clinical text data.
deidentification neural networks transformers
Published: Nov. 2, 2023. Version: 1.0.0
Software Open Access

PhysioTag: An Open-Source Platform for Collaborative Annotation of Physiological Waveforms

Lucas McCullum, Benjamin Moody, Hasan Saeed, et al.

Platform for collaborative and interactive annotation of physiological waveform data.
annotation
Published: April 25, 2023. Version: 1.0.0
Software Open Access

Waveform Database Software Package (WFDB) for Python

Chen Xie, Lucas McCullum, Alistair Johnson, et al.

Tools for working with waveforms in Python.
waveform wfdb python
Published: Jan. 24, 2023. Version: 4.1.0
Software Credentialed Access

Code for generating the HAIM multimodal dataset of MIMIC-IV clinical data and x-rays

Luis R Soenksen, Yu Ma, Cynthia Zeng, et al.

Code for generating the HAIM multimodal dataset of MIMIC-IV clinical data and x-rays
database code multimodality
Published: Aug. 23, 2022. Version: 1.0.1
Software Open Access

WFDB Software Package

George Moody, Tom Pollard, Benjamin Moody

The original Waveform Database Software (WFDB) Package, in C.
waveform wfdb
Published: June 20, 2022. Version: 10.7.0