Resources


Software Open Access

Transformer-DeID: Deidentification of free-text clinical notes with transformers

Callandra Moore, Lucas Bulgarelli, Tom Pollard, Alistair Johnson

Fine tune transformer-based neural networks to deidentify clinical text data.

deidentification neural networks transformers

Published: Nov. 2, 2023. Version: 1.0.0


Database Open Access

Integration of Electroencephalogram and Eye-Gaze Datasets for Performance Evaluation in Fundamentals of Laparoscopic Surgery (FLS) Tasks

Somayeh B Shafiei, Saeed Shadpour

Brain activity and eye gaze data were collected from a group of 25 participants who completed the FLS tasks using a trainer box (Pyxus®). Each participant performed the tasks five times, and their performance was evaluated by an expert rater.

Published: Aug. 23, 2023. Version: 1.0.0

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Database Open Access

Electroencephalogram and eye-gaze datasets for robot-assisted surgery performance evaluation

Somayeh B Shafiei, Saeed Shadpour, James Mohler, Mehdi Seilanian Toussi, Philippa Doherty, Zhe Jing

The brain activity and eye gaze data were recorded from 25 participants performing surgical tasks using a robot simulator. The performance score was created by the simulator. Data can be used to evaluate surgical performance.

Published: July 14, 2023. Version: 1.0.0

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Model Credentialed Access

EntityBERT: BERT-based Models Pretrained on MIMIC-III with or without Entity-centric Masking Strategy for the Clinical Domain

Chen Lin, Steven Bethard, Guergana Savova, Timothy Miller, Dmitriy Dligach

Pretraining of models with a broad representation of biomedical terminology (PubMedBERT) on MIMIC-III corpus along with or without a novel entity-centric masking strategy.

Published: March 17, 2022. Version: 1.0.1


Database Open Access

Brno University of Technology ECG Signal Database with Annotations of P Wave (BUT PDB)

Lucie Maršánová, Andrea Nemcova, Radovan Smisek, Lukas Smital, Martin Vitek

BUT PDB is an ECG signal database with marked peaks of P waves created for the development, and objective comparison of P wave detection algorithms. The database consists of 50 2-minute 2-lead ECG signal records with various types of pathology.

p wave ecg

Published: Jan. 19, 2021. Version: 1.0.0

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Database Open Access

Brno University of Technology ECG Quality Database (BUT QDB)

Andrea Nemcova, Radovan Smisek, Kamila Opravilová, Martin Vitek, Lukas Smital, Lucie Maršánová

The database is intended for the development and objective comparison of algorithms designed to assess the quality of ECG records. It also enables objective comparison of results between authors.

Published: July 22, 2020. Version: 1.0.0

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Database Credentialed Access

MedNLI for Shared Task at ACL BioNLP 2019

Chaitanya Shivade

Data for the MedNLI Shared Task at the 2019 ACL BioNLP 2019 Workshop on Biomedical Language Processing

natural language inference recognizing textual entailment mimic

Published: Nov. 28, 2019. Version: 1.0.1


Challenge Open Access

2018 IEEE BHI and BSN Data Challenge

Tom Pollard, Alistair Johnson, Jesse Raffa

A challenge to explore real clinical questions in critically ill patients using the MIMIC. A collaboration with the IEEE Conference on Biomedical and Health Informatics 2018 and the IEEE Conference on Body Sensor Networks.

weekend effect ieee challenge mimic

Published: Feb. 5, 2018. Version: 1.0


Software Open Access

Data Chromatix

Analysis of biomedical time series plays a key role in clinical management and basic investigation. However, most conventional monitors streaming data in real-time show only the most recent values, not referenced to past dynamics. The proposed visua…

visualization

Published: Nov. 9, 2015. Version: 1.0.0


Database Open Access

MGH/MF Waveform Database

The Massachusetts General Hospital/Marquette Foundation (MGH/MF) Waveform Database is a comprehensive collection of electronic recordings of hemodynamic and electrocardiographic waveforms of stable and unstable patients in critical care units, opera…

mgh multiparameter critical care ecg

Published: June 10, 2002. Version: 1.0.0

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