Resources
Challenge Credentialed Access
Analysis of Clinical Text: Task 14 of SemEval 2015
Guergana Savova
Published: Dec. 28, 2014. Version: 2.0
Database Credentialed Access
Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries
Melissa Poulsen, Vanessa Troiani, Philip Freda, Danielle Mowery, Anahita Davoudi
clinical notes substance use opioid use disorder natural language processing
Published: Feb. 8, 2023. Version: 1.0.0
Model Credentialed Access
EntityBERT: BERT-based Models Pretrained on MIMIC-III with or without Entity-centric Masking Strategy for the Clinical Domain
Chen Lin, Steven Bethard, Guergana Savova, Timothy Miller, Dmitriy Dligach
Published: March 17, 2022. Version: 1.0.1
Database Contributor Review
BRATECA (Brazilian Tertiary Care Dataset): a Clinical Information Dataset for the Portuguese Language
Henrique Dias, Ana Helena Dias Pereira dos Ulbrich
prescriptions exams tertiary care clinical notes natural language processing
Published: July 14, 2022. Version: 1.1
Model Credentialed Access
Characterization of Stigmatizing Language in Medical Records
Keith Harrigian, Ayah Zirikly, Brant Chee, Alya Ahmad, Anne Links, Somnath Saha, Mary Catherine Beach, Mark Dredze
mimic clinical natural language processing large language models domain transfer bias stigmatizing language
Published: Nov. 6, 2023. Version: 1.0.0
Database Credentialed Access
RadGraph: Extracting Clinical Entities and Relations from Radiology Reports
Saahil Jain, Ashwin Agrawal, Adriel Saporta, Steven QH Truong, Du Nguyen Duong, Tan Bui, Pierre Chambon, Matthew Lungren, Andrew Ng, Curtis Langlotz, Pranav Rajpurkar
entity and relation extraction graph multi-modal radiology natural language processing
Published: June 3, 2021. Version: 1.0.0
Database Credentialed Access
Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization
Yanjun Gao, John Caskey, Timothy Miller, Brihat Sharma, Matthew Churpek, Dmitriy Dligach, Majid Afshar
Published: Sept. 30, 2022. Version: 1.0.0
Model Credentialed Access
Transformer models trained on MIMIC-III to generate synthetic patient notes
Ali Amin-Nejad, Julia Ive, Sumithra Velupillai
Published: May 27, 2020. Version: 1.0.0
Database Credentialed Access
Phenotype Annotations for Patient Notes in the MIMIC-III Database
Edward Moseley, Leo Anthony Celi, Joy Wu, Franck Dernoncourt
patient classification natural language processing
Published: March 5, 2020. Version: 1.20.03
Database Credentialed Access
RadGraph: Extracting Clinical Entities and Relations from Radiology Reports
Saahil Jain, Ashwin Agrawal, Adriel Saporta, Steven QH Truong, Du Nguyen Duong, Tan Bui, Pierre Chambon, Matthew Lungren, Andrew Ng, Curtis Langlotz, Pranav Rajpurkar
entity and relation extraction graph multi-modal radiology natural language processing
Published: June 3, 2021. Version: 1.0.0