Resources


Database Credentialed Access

Phenotype Annotations for Patient Notes in the MIMIC-III Database

Edward Moseley, Leo Anthony Celi, Joy Wu, Franck Dernoncourt

This dataset contains clinical notes which have been annotated by at least two expert human annotators for over ten high-context patient phenotypes, including advanced/metastatic cancer, substance abuse, and treatment non-adherence.

natural language processing patient classification

Published: March 5, 2020. Version: 1.20.03


Challenge Credentialed Access

ShAReCLEF eHealth 2013: Natural Language Processing and Information Retrieval for Clinical Care

Danielle Mowery

2013 ShARe/CLEF eHealth Evaluation Lab: Natural Language Processing and Information Retrieval for Clinical Care (Tasks 1 and 2).

natural language processing

Published: Feb. 15, 2013. Version: 1.0


Model Credentialed Access

Transformer models trained on MIMIC-III to generate synthetic patient notes

Ali Amin-Nejad, Julia Ive, Sumithra Velupillai

Machine learning models that have been trained using MIMIC-III to enable the creation of synthetic discharge summaries.

Published: May 27, 2020. Version: 1.0.0


Database Open Access

MIMIC-III Waveform Database Matched Subset

Benjamin Moody, George Moody, Mauricio Villarroel, Gari Clifford, Ikaro Silva

The MIMIC-III Waveform Database Matched Subset contains numerous physiological signals (including continuous ECG, PPG, ABP, and other signals) that have been associated with patients in the MIMIC-III Clinical Database.

Published: April 7, 2020. Version: 1.0

Visualize waveforms

Database Open Access

MIMIC-III Waveform Database

Benjamin Moody, George Moody, Mauricio Villarroel, Gari Clifford, Ikaro Silva

The MIMIC-III Waveform Database contains numerous physiological signals (including continuous ECG, PPG, ABP, and other signals) and periodic measurements, recorded by bedside patient monitors from about 30,000 patients in intensive care units.

Published: April 7, 2020. Version: 1.0

Visualize waveforms

Database Open Access

Visceral adipose tissue measurements during pregnancy

Alexandre da Silva Rocha, Lisia von Diemen, Daniela Kretzer, Salete Matos, Juliana Rombaldi Bernardi, José Antônio Magalhães

Maternal visceral adipose tissue measurements collected as part of a cohort study of 154 pregnant women.

Published: March 23, 2020. Version: 1.0.0


Database Open Access

Clinical data from the MIMIC-II database for a case study on indwelling arterial catheters

Jesse Raffa

This version was used in Chapter 16 of the textbook.

Published: Oct. 28, 2016. Version: 1.0


Challenge Credentialed Access

ShAReCLEF eHealth Evaluation Lab 2014 (Task 2): Disorder Attributes in Clinical Reports

Danielle Mowery

The ShARe/CLEF eHealth 2014 Challenge (Task 2) on Disorder Attributes in Clinical Reports

Published: Nov. 1, 2013. Version: 1.0