Resources


Database Credentialed Access

Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization

Yanjun Gao, John Caskey, Timothy Miller, Brihat Sharma, Matthew Churpek, Dmitriy Dligach, Majid Afshar

We introduce a hierarchical annotation suite of tasks addressing clinical text understanding, reasoning and abstraction over evidence, and diagnosis summarization. One task is section tagging major section and the other task is diagnosis generation.

Published: Sept. 30, 2022. Version: 1.0.0


Database Credentialed Access

MIMIC-III Clinical Database CareVue subset

Alistair Johnson, Tom Pollard, Roger Mark

A subset of the MIMIC-III Clinical Database containing only patients admitted from 2001 - 2008.

Published: Sept. 21, 2022. Version: 1.4


Database Open Access

MIMIC-IV Waveform Database

Benjamin Moody, Sicheng Hao, Brian Gow, Tom Pollard, Wei Zong, Roger Mark

The MIMIC-IV Waveform Database collects physiological signals and measurements from ICU bedside monitors. Coupled with the clinical information available in MIMIC-IV, it provides a detailed view into the physiology of critically ill patients.

Published: July 10, 2022. Version: 0.1.0

Visualize waveforms

Software Open Access

Waveform Database Software Package (WFDB) for MATLAB and Octave

Ikaro Silva, Benjamin Moody, George Moody

Tools for working with waveforms in MATLAB.

Published: April 5, 2021. Version: 0.10.0


Database Credentialed Access

National Institutes of Health Stroke Scale (NIHSS) Annotations for the MIMIC-III Database

Jiayang Wang, Xiaoshuo Huang, Lin Yang, Jiao Li

A dataset of annotated NIHSS scale items and corresponding scores from stroke patients discharge summaries in MIMIC-III.

Published: Jan. 25, 2021. Version: 1.0.0


Model Credentialed Access

Transformer models trained on MIMIC-III to generate synthetic patient notes

Ali Amin-Nejad, Julia Ive, Sumithra Velupillai

Machine learning models that have been trained using MIMIC-III to enable the creation of synthetic discharge summaries.

Published: May 27, 2020. Version: 1.0.0


Database Open Access

MIMIC-III Waveform Database Matched Subset

Benjamin Moody, George Moody, Mauricio Villarroel, Gari D. Clifford, Ikaro Silva

Physiological signals (including continuous ECG, PPG, ABP, and other signals) that are associated with patients in the MIMIC-III Clinical Database.

Published: April 7, 2020. Version: 1.0

Visualize waveforms

Database Open Access

MIMIC-III Waveform Database

Benjamin Moody, George Moody, Mauricio Villarroel, Gari D. Clifford, Ikaro Silva

The MIMIC-III Waveform Database contains numerous physiological signals (including continuous ECG, PPG, ABP, and other signals) and periodic measurements, recorded by bedside patient monitors from about 30,000 patients in intensive care units.

Published: April 7, 2020. Version: 1.0

Visualize waveforms

Database Open Access

Visceral adipose tissue measurements during pregnancy

Alexandre da Silva Rocha, Lisia von Diemen, Daniela Kretzer, Salete Matos, Juliana Rombaldi Bernardi, José Antônio Magalhães

Maternal visceral adipose tissue measurements collected as part of a cohort study of 154 pregnant women.

Published: March 23, 2020. Version: 1.0.0


Database Open Access

Clinical data from the MIMIC-II database for a case study on indwelling arterial catheters

Jesse Raffa

Dataset extracted from MIMIC-II for a tutorial on effectiveness of indwelling arterial catheters in hemodynamically stable patients with respiratory failure for mortality outcomes.

Published: Oct. 28, 2016. Version: 1.0