Resources
Database Credentialed Access
MIMIC-CXR Database
Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng
computer vision chest x-rays natural language processing mimic machine learning radiology
Published: July 23, 2024. Version: 2.1.0
Challenge Credentialed Access
ShAReCLEF eHealth 2013: Natural Language Processing and Information Retrieval for Clinical Care
Danielle Mowery
Published: Feb. 15, 2013. Version: 1.0
Database Open Access
Synthetic Mention Corpora for Disease Entity Recognition and Normalization
Kuleen Sasse, John David Osborne
nlp named entity recognition machine learning data augmentation entity normalization
Published: Feb. 3, 2025. Version: 1.0.0
Database Credentialed Access
CXR-PRO: MIMIC-CXR with Prior References Omitted
Vignav Ramesh, Nathan Chi, Pranav Rajpurkar
generation free-text radiology reports references to priors retrieval large language models
Published: Nov. 23, 2022. Version: 1.0.0
Challenge Credentialed Access
SNOMED CT Entity Linking Challenge
Will Hardman, Mark Banks, Rory Davidson, Donna Truran, Nindya Widita Ayuningtyas, Hoa Ngo, Alistair Johnson, Tom Pollard
snomed entity linking clinical annotation
Published: Dec. 19, 2023. Version: 1.0.0
Database Credentialed Access
National Institutes of Health Stroke Scale (NIHSS) Annotations for the MIMIC-III Database
Jiayang Wang, Xiaoshuo Huang, Lin Yang, Jiao Li
Published: Jan. 25, 2021. Version: 1.0.0
Model Credentialed Access
Shareable Artificial Intelligence to Extract Cancer Outcomes from Electronic Health Records for Precision Oncology Research
Kenneth Kehl, Pavel Trukhanov, Christopher Fong, Justin Jee, Karl Pichotta, Morgan Paul, Chelsea Nichols, Michele Waters, Nikolaus Schultz, Deborah Schrag
Published: Oct. 24, 2024. Version: 1.0.0
Database Restricted Access
Application of Med-PaLM 2 in the refinement of MIMIC-CXR labels
Kendall Park, Rory Sayres, Andrew Sellergren, Tom Pollard, Fayaz Jamil, Timo Kohlberger, Charles Lau, Atilla Kiraly
Published: Feb. 4, 2025. Version: 1.0.0
Database Credentialed Access
Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization
Yanjun Gao, John Caskey, Timothy Miller, Brihat Sharma, Matthew Churpek, Dmitriy Dligach, Majid Afshar
Published: Sept. 30, 2022. Version: 1.0.0
Database Credentialed Access
MIMIC-IV-Note: Deidentified free-text clinical notes
Alistair Johnson, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark
deidentification critical care clinical notes natural language processing electronic health record mimic
Published: Jan. 6, 2023. Version: 2.2