Resources


Database Credentialed Access

DrugEHRQA: A Question Answering Dataset on Structured and Unstructured Electronic Health Records For Medicine Related Queries

Jayetri Bardhan, Anthony Colas, Kirk Roberts, Daisy Zhe Wang

DrugEHRQA is a QA dataset containing question-answers from MIMIC-III tables and discharge summaries.

question-answer qa

Published: April 12, 2022. Version: 1.0.0

Database Credentialed Access

MedNLI - A Natural Language Inference Dataset For The Clinical Domain

Chaitanya Shivade

This is a resource for training machine learning models for language inference in the medical domain.

natural language inference recognizing textual entailment

Published: Oct. 1, 2019. Version: 1.0.0

Software Open Access

Cardiac Output Estimation from Arterial Blood Pressure Waveforms

This project contains the code used for a study that rigorously compares 11 estimates against thermodilution cardiac output (TCO) using 120 subjects from the MIMIC II database (all subjects for whom multiple TCO measurements were recorded at the tim…

cardiac output estimation

Published: Aug. 2, 2007. Version: 1.0.0

Model Credentialed Access

EntityBERT: BERT-based Models Pretrained on MIMIC-III with or without Entity-centric Masking Strategy for the Clinical Domain

Chen Lin, Steven Bethard, Guergana Savova, Timothy Miller, Dmitriy Dligach

Pretraining of models with a broad representation of biomedical terminology (PubMedBERT) on MIMIC-III corpus along with or without a novel entity-centric masking strategy.

Published: March 17, 2022. Version: 1.0.1

Model Credentialed Access

Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes

Eric Lehman, Sarthak Jain, Karl Pichotta, Yoav Goldberg, Byron Wallace

We explore recovering sensitive info from BERT trained over non-deidentified EHR. We make our models and data available to further facilitate research.

Published: April 28, 2021. Version: 1.0.0

Database Restricted Access

Pulmonary Edema Severity Grades Based on MIMIC-CXR

Ruizhi Liao, Geeticka Chauhan, Polina Golland, Seth Berkowitz, Steven Horng

Pulmonary edema metadata and labels for MIMIC-CXR

Published: Feb. 9, 2021. Version: 1.0.1

Database Credentialed Access

National Institutes of Health Stroke Scale (NIHSS) Annotations for the MIMIC-III Database

Jiayang Wang, Xiaoshuo Huang, Lin Yang, Jiao Li

A dataset of annotated NIHSS scale items and corresponding scores from stroke patients discharge summaries in MIMIC-III.

Published: Jan. 25, 2021. Version: 1.0.0

Model Credentialed Access

Transformer models trained on MIMIC-III to generate synthetic patient notes

Ali Amin-Nejad, Julia Ive, Sumithra Velupillai

Machine learning models that have been trained using MIMIC-III to enable the creation of synthetic discharge summaries.

Published: May 27, 2020. Version: 1.0.0

Database Open Access

MIMIC-III Waveform Database Matched Subset

Benjamin Moody, George Moody, Mauricio Villarroel, Gari D. Clifford, Ikaro Silva

Physiological signals (including continuous ECG, PPG, ABP, and other signals) that are associated with patients in the MIMIC-III Clinical Database.

Published: April 7, 2020. Version: 1.0

Visualize waveforms

Database Open Access

MIMIC-III Waveform Database

Benjamin Moody, George Moody, Mauricio Villarroel, Gari D. Clifford, Ikaro Silva

The MIMIC-III Waveform Database contains numerous physiological signals (including continuous ECG, PPG, ABP, and other signals) and periodic measurements, recorded by bedside patient monitors from about 30,000 patients in intensive care units.

Published: April 7, 2020. Version: 1.0

Visualize waveforms