Resources
Database Contributor Review
CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools
Eulalia Farre Maduell, Salvador Lima-Lopez, Santiago Andres Frid, Artur Conesa, Elisa Asensio, Antonio Lopez-Rueda, Helena Arino, Elena Calvo, Maria Jesús Bertran, Maria Angeles Marcos, Montserrat Nofre Maiz, Laura Tañá Velasco, Antonia Marti, Ricardo Farreres, Xavier Pastor, Xavier Borrat Frigola, Martin Krallinger
de-identification anonymization clinical ner
Published: Nov. 2, 2023. Version: 1.0
Database Credentialed Access
Eye Gaze Data for Chest X-rays
Alexandros Karargyris, Satyananda Kashyap, Ismini Lourentzou, Joy Wu, Matthew Tong, Arjun Sharma, Shafiq Abedin, David Beymer, Vandana Mukherjee, Elizabeth Krupinski, Mehdi Moradi
audio convolutional network heatmap eye tracking multimodal chest x-ray radiology machine learning explainability chest cxr deep learning
Published: Sept. 12, 2020. Version: 1.0.0
Database Credentialed Access
Eye Gaze Data for Chest X-rays
Alexandros Karargyris, Satyananda Kashyap, Ismini Lourentzou, Joy Wu, Matthew Tong, Arjun Sharma, Shafiq Abedin, David Beymer, Vandana Mukherjee, Elizabeth Krupinski, Mehdi Moradi
audio convolutional network heatmap eye tracking multimodal chest x-ray radiology machine learning explainability chest cxr deep learning
Published: Sept. 12, 2020. Version: 1.0.0
Database Credentialed Access
CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports
Vlada Rozova, Anna Khanina, Jasmine Teng, Joanne Teh, Leon Worth, Monica Slavin, karin thursky, Karin Verspoor
nlp clinical documentation information extraction invasive fungal infections
Published: Nov. 2, 2023. Version: 1.0.1
Database Credentialed Access
MIMIC-IV-Note: Deidentified free-text clinical notes
Alistair Johnson, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark
mimic deidentification critical care electronic health record clinical notes natural language processing
Published: Jan. 6, 2023. Version: 2.2
Database Credentialed Access
BRAX, a Brazilian labeled chest X-ray dataset
Eduardo Pontes Reis, Joselisa Paiva, Maria Carolina Bueno da Silva, Guilherme Alberto Sousa Ribeiro, Victor Fornasiero Paiva, Lucas Bulgarelli, Henrique Lee, Paulo Victor dos Santos, vanessa brito, Lucas Amaral, Gabriel Beraldo, Jorge Nebhan Haidar Filho, Gustavo Teles, Gilberto Szarf, Tom Pollard, Alistair Johnson, Leo Anthony Celi, Edson Amaro
chest x-ray artificial intelligence dataset
Published: June 17, 2022. Version: 1.1.0
Database Credentialed Access
MIMIC-CXR Database
Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng
mimic computer vision chest x-rays radiology machine learning natural language processing
Published: Sept. 19, 2019. Version: 2.0.0
Database Credentialed Access
MS-CXR-T: Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing
Shruthi Bannur, Stephanie Hyland, Qianchu Liu, Fernando Pérez-García, Max Ilse, Daniel Coelho de Castro, Benedikt Boecking, Harshita Sharma, Kenza Bouzid, Anton Schwaighofer, Maria Teodora Wetscherek, Hannah Richardson, Tristan Naumann, Javier Alvarez Valle, Ozan Oktay
multimodal chest x-ray radiology cxr disease progression vision-language processing
Published: March 17, 2023. Version: 1.0.0
Database Restricted Access
REFLACX: Reports and eye-tracking data for localization of abnormalities in chest x-rays
Ricardo Bigolin Lanfredi, Mingyuan Zhang, William Auffermann, Jessica Chan, Phuong-Anh Duong, Vivek Srikumar, Trafton Drew, Joyce Schroeder, Tolga Tasdizen
computer vision eye tracking radiology report chest x-rays radiology machine learning reflacx fixations gaze deep learning
Published: Sept. 27, 2021. Version: 1.0.0
Database Credentialed Access
MS-CXR: Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing
Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez Valle, Hoifung Poon, Ozan Oktay
chest x-ray vision-language processing
Published: May 16, 2022. Version: 0.1