Resources


Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng

Chest radiographs in DICOM format with associated free-text reports.

mimic chest x-rays computer vision natural language processing radiology machine learning

Published: Sept. 19, 2019. Version: 2.0.0


Database Credentialed Access

RadGraph: Extracting Clinical Entities and Relations from Radiology Reports

Saahil Jain, Ashwin Agrawal, Adriel Saporta, Steven QH Truong, Du Nguyen Duong, Tan Bui, Pierre Chambon, Matthew Lungren, Andrew Ng, Curtis Langlotz, Pranav Rajpurkar

RadGraph is a dataset of entities and relations in full-text chest X-ray radiology reports, which are obtained using a novel information extraction (IE) schema to capture clinically relevant information in a radiology report.

natural language processing radiology entity and relation extraction graph multi-modal

Published: June 3, 2021. Version: 1.0.0


Database Credentialed Access

MIMIC-CXR-JPG - chest radiographs with structured labels

Alistair Johnson, Matt Lungren, Yifan Peng, Zhiyong Lu, Roger Mark, Seth Berkowitz, Steven Horng

Chest x-rays in JPG format with structured labels derived from the associated radiology report.

mimic computer vision chest x-ray deep learning radiology

Published: Nov. 14, 2019. Version: 2.0.0


Software Open Access

R-DECO: An open-source Matlab based graphical user interface for the detection and correction of R-peaks

Jonathan Moeyersons, Matthew Amoni, Sabine Van Huffel, Rik Willems, Carolina Varon

An open-source Matlab based graphical user interface for the detection and correction of R-peaks.

algorithms and analysis of algorithms signal processiong visual analysis graphical user interface

Published: Sept. 8, 2020. Version: 1.0.0


Database Credentialed Access

Phenotype Annotations for Patient Notes in the MIMIC-III Database

Edward Moseley, Leo Anthony Celi, Joy Wu, Franck Dernoncourt

Clinical notes, annotated by at least two expert annotators for over ten patient phenotypes, including advanced cancer, substance abuse, and treatment non-adherence.

patient classification natural language processing

Published: March 5, 2020. Version: 1.20.03


Database Open Access

EPHNOGRAM: A Simultaneous Electrocardiogram and Phonocardiogram Database

Arsalan Kazemnejad, Peiman Gordany, Reza Sameni

An open-access database recorded during the EPHNOGRAM project, consisting of simultaneous electrocardiogram (ECG) and phonocardiogram (PCG) recordings from young healthy adults, during stress-test experiments.

phonocardiogram stress-test electrocardiogram

Published: June 11, 2021. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

Curated Data for Describing Blood Glucose Management in the Intensive Care Unit

Aldo Robles Arévalo, Roselyn Mateo-Collado, Leo Anthony Celi

The data subsets consist of time series files that includes all the curated entries of glucose readings and insulin inputs from MIMIC-III database.

critical care insulin replacement therapy glycemic control

Published: April 19, 2021. Version: 1.0.1


Software Open Access

Waveform Database Software Package (WFDB) for Python

Chen Xie, Lucas McCullum, Alistair Johnson, Tom Pollard, Brian Gow, Benjamin Moody

Tools for working with waveforms in Python.

wfdb waveform python

Published: March 26, 2021. Version: 3.3.0


Database Credentialed Access

MedNLI for Shared Task at ACL BioNLP 2019

Chaitanya Shivade

Data for the MedNLI Shared Task at the 2019 ACL BioNLP 2019 Workshop on Biomedical Language Processing

recognizing textual entailment natural language inference mimic

Published: Nov. 28, 2019. Version: 1.0.1


Software Open Access

Heart Vector Origin Point Detection and Time-Coherent Median Beat Construction

Erick Andres Perez Alday, Larisa Tereshchenko

The algorithm finds the heart vector origin point and constructs the time-coherent median beat. VCG origin point is defined as the electrically quiet or isoelectric state of the heart when the heart vector does not move in 3D space.

signal processing baseline vectorcardiogram origin point heart vector electrocardiogram

Published: May 25, 2021. Version: 1.0.0