Tdocutils.nodesdocument)}}( attributes}(backrefs]ids]classes]sourceED:\Mariano\misc\ecg-kit\help\sphinx\source\ABP_PPG_peak_detection.rstnames]dupnames]uids}(pulse-det-result-formathsection)}}(expect_referenced_by_name}pulse_det_result_formathtarget)}}(h}(h]h ]h ]h]h]refidhutagnamehsourcehhh rawsource.. _pulse_det_result_format:lineKgchildren]parenth)}}(h}(h]examplesah]h ]examplesah ]h]uh+hh,hhhh-h/KDh0](htitle)}}(h}(h]h]h ]h ]h]uh+h@h,hhhh-Examplesh/KDh0]hTextExamples}}(h-hKh2hCubah2h4ubh paragraph)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-0Create the *ECGtask\_PPG\_ABP\_detector* object.h/KFh0](hN Create the }}(h- Create the h2hWubhemphasis)}}(h}(h]h]h ]h ]h]uh+hgh-*ECGtask\_PPG\_ABP\_detector*h0]hNECGtask_PPG_ABP_detector}}(h-h>h2hjubah2hWubhN object.}}(h- object.h2hWubeh2h4ubh literal_block)}}(h}(h]h ]h ]codeah]h] xml:spacepreserveuh+hh,hhhh-% with the task name ECG_w.ECGtaskHandle = 'PPG_ABP_detector'; % or create an specific handle to have more control ECGt_PPG = ECGtask_PPG_ABP_detector();h/KNh0]hN% with the task name ECG_w.ECGtaskHandle = 'PPG_ABP_detector'; % or create an specific handle to have more control ECGt_PPG = ECGtask_PPG_ABP_detector();}}(h-% with the task name ECG_w.ECGtaskHandle = 'PPG_ABP_detector'; % or create an specific handle to have more control ECGt_PPG = ECGtask_PPG_ABP_detector();h2hubah2h4ubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-pand then you are ready to set the algorithms to use. In the following example you have several possible set-ups.h/KOh0]hNpand then you are ready to set the algorithms to use. In the following example you have several possible set-ups.}}(h-hh2hubah2h4ubh)}}(h}(h]h ]h ]hah]h]hhuh+hh,hhhh-% select an specific algorithm. Default: Run all detectors ECGt_PPG.detectors = 'wavePPG'; % A J. Lazaro algorithm for peak detection ECGt_PPG.detectors = 'wabp';  % Another algorithm from Physioneth/KXh0]hN% select an specific algorithm. Default: Run all detectors ECGt_PPG.detectors = 'wavePPG'; % A J. Lazaro algorithm for peak detection ECGt_PPG.detectors = 'wabp';  % Another algorithm from Physionet}}(h-% select an specific algorithm. Default: Run all detectors ECGt_PPG.detectors = 'wavePPG'; % A J. Lazaro algorithm for peak detection ECGt_PPG.detectors = 'wabp';  % Another algorithm from Physioneth2hubah2h4ubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-AFinally set the task to the wrapper object, and execute the task.h/KYh0]hNAFinally set the task to the wrapper object, and execute the task.}}(h-hh2hubah2h4ubh)}}(h}(h]h ]h ]hah]h]hhuh+hh,hhhh->ECG_w.ECGtaskHandle= ECGt_PPG; % set the ECG task ECG_w.Run();h/K_h0]hN>ECG_w.ECGtaskHandle= ECGt_PPG; % set the ECG task ECG_w.Run();}}(h->ECG_w.ECGtaskHandle= ECGt_PPG; % set the ECG task ECG_w.Run();h2hubah2h4ubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-You can check the result of this task, with either the :doc:`detection corrector ` or the :doc:`visualization functions `.h/K`h0](hN7You can check the result of this task, with either the }}(h-7You can check the result of this task, with either the h2hubsphinx.addnodes pending_xref)}}(h}(h]refwarnh ]h ]reftypedocrefdocABP_PPG_peak_detectionh] refexplicith] refdomainh> reftargetABP_PPG_peak_correctionuh+hh,hh-4:doc:`detection corrector `h/K`h0]hliteral)}}(h}(h]h]h ]h ](xrefheh]uh+hh-hh0]hNdetection corrector}}(h-h>h2jubah2hubah2hubhN or the }}(h- or the h2hubh)}}(h}(h]hh ]h ]reftypedochhh] refexplicith] refdomainh>hplot_ecg_stripuh+hh,hh-/:doc:`visualization functions `h/K`h0]j)}}(h}(h]h]h ]h ](j jeh]uh+hh-j%h0]hNvisualization functions}}(h-h>h2j(ubah2jubah2hubhN.}}(h-.h2hubeh2h4ubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-QAlso check this :ref:`example ` for further information.h/Kdh0](hNAlso check this }}(h-Also check this h2j=ubh)}}(h}(h]hh ]h ]reftyperefhhh] refexplicith] refdomainstdhppg_abp_pulse_detectionuh+hh,hh-(:ref:`example `h/Kdh0]hinline)}}(h}(h]h]h ]h ](j jZstd-refeh]uh+j^h-j\h0]hNexample}}(h-h>h2jaubah2jNubah2j=ubhN for further information.}}(h- for further information.h2j=ubeh2h4ubh"eh2h)}}(h}(h]abp/ppg peak detectionah]h ]abp-ppg-peak-detectionah ]h]uh+hh,hhhh-h>h/Kh0](hA)}}(h}(h]h]h ]h ]h]uh+h@h,hhhh-ABP/PPG peak detectionh/Kh0]hNABP/PPG peak detection}}(h-jh2jubah2jwubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-UThis document describes how to perform automatic peak detection in pulsatile signals.h/Kh0]hNUThis document describes how to perform automatic peak detection in pulsatile signals.}}(h-jh2jubah2jwubh)}}(h}(h] descriptionah]h ] descriptionah ]h]uh+hh,hhhh-h>h/K h0](hA)}}(h}(h]h]h ]h ]h]uh+h@h,hhhh- Descriptionh/K h0]hN Description}}(h-jh2jubah2jubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-This task perform peak detection in pulsatile signals such as arterial blood pressure (ABP) or plethysmographic (PPG). The task uses two algorithms to achieve pulse detection, and, as in QRS detection task you can choose to use any of them.h/K h0]hNThis task perform peak detection in pulsatile signals such as arterial blood pressure (ABP) or plethysmographic (PPG). The task uses two algorithms to achieve pulse detection, and, as in QRS detection task you can choose to use any of them.}}(h-jh2jubah2jubeh2jwubh)}}(h}(h]input argumentsah]h ]input-argumentsah ]h]uh+hh,hhhh-h>h/Kh0](hA)}}(h}(h]h]h ]h ]h]uh+h@h,hhhh-Input Argumentsh/Kh0]hNInput Arguments}}(h-jh2jubah2jubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-The properties that the ECGtask\_PPG\_ABP\_detector class accepts are described below. The usage of these properties is restricted to low-level programming, you can use this task through the ECGwrapper as is shown in the example below.h/Kh0]hNThe properties that the ECGtask_PPG_ABP_detector class accepts are described below. The usage of these properties is restricted to low-level programming, you can use this task through the ECGwrapper as is shown in the example below.}}(h-The properties that the ECGtask\_PPG\_ABP\_detector class accepts are described below. The usage of these properties is restricted to low-level programming, you can use this task through the ECGwrapper as is shown in the example below.h2jubah2jubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-Y``progress_handle`` — Used to track the progress within your function. ``[] (default)``h/Kh0](j)}}(h}(h]h]h ]h ]h]uh+hh-``progress_handle``h0]hNprogress_handle}}(h-h>h2jubah2jubhN6 — Used to track the progress within your function. }}(h-6 — Used to track the progress within your function. h2jubj)}}(h}(h]h]h ]h ]h]uh+hh-``[] (default)``h0]hN [] (default)}}(h-h>h2jubah2jubeh2jubh block_quote)}}(h}(h]h]h ]h ]h]uh+j,h,hhhh-h>h/Nh0]hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-progress\_handle, is a handle to a :doc:`progress\_bar ` object, that can be used to track the progress within your function.h/Kh0](hN"progress_handle, is a handle to a }}(h-#progress\_handle, is a handle to a h2j9ubh)}}(h}(h]hh ]h ]reftypedochhh] refexplicith] refdomainh>h progress_baruh+hh,hh-#:doc:`progress\_bar `h/Kh0]j)}}(h}(h]h]h ]h ](j jQeh]uh+hh-jWh0]hN progress_bar}}(h-h>h2jZubah2jJubah2j9ubhNE object, that can be used to track the progress within your function.}}(h-E object, that can be used to track the progress within your function.h2j9ubeh2j/ubah2jubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-J``tmp_path`` — The path to store temporary data. ``tempdir() (default)``h/K h0](j)}}(h}(h]h]h ]h ]h]uh+hh- ``tmp_path``h0]hNtmp_path}}(h-h>h2jzubah2joubhN' — The path to store temporary data. }}(h-' — The path to store temporary data. h2joubj)}}(h}(h]h]h ]h ]h]uh+hh-``tempdir() (default)``h0]hNtempdir() (default)}}(h-h>h2jubah2joubeh2jubj-)}}(h}(h]h]h ]h ]h]uh+j,h,hhhh-h>h/Nh0]hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-QA folder to store temporary data. Full path to a directory with write privileges.h/K"h0]hNQA folder to store temporary data. Full path to a directory with write privileges.}}(h-jh2jubah2jubah2jubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-Q``lead_config`` — Select which signals to process. ``'PPG-ABP-only' (default)``h/K$h0](j)}}(h}(h]h]h ]h ]h]uh+hh-``lead_config``h0]hN lead_config}}(h-h>h2jubah2jubhN& — Select which signals to process. }}(h-& — Select which signals to process. h2jubj)}}(h}(h]h]h ]h ]h]uh+hh-``'PPG-ABP-only' (default)``h0]hN'PPG-ABP-only' (default)}}(h-h>h2jubah2jubeh2jubj-)}}(h}(h]h]h ]h ]h]uh+j,h,Nhhh-h>h/Nh0](hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-This property control on which signals the pulse detection algorithms will be applied. A cell string or char with any of the following names:h/K&h0]hNThis property control on which signals the pulse detection algorithms will be applied. A cell string or char with any of the following names:}}(h-jh2jubah2jubh bullet_list)}}(h}(h]h ]h ]h]bullet-h]uh+jh-h>h0](h list_item)}}(h}(h]h]h ]h ]h]uh+jh-"'*all-leads*'. Process all leads. h0]hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-!'*all-leads*'. Process all leads.h/K)h0](hN'}}(h-'h2j ubhh)}}(h}(h]h]h ]h ]h]uh+hgh- *all-leads*h0]hN all-leads}}(h-h>h2j1ubah2j ubhN'. Process all leads.}}(h-'. Process all leads.h2j ubeh2jubah2jubj)}}(h}(h]h]h ]h ]h]uh+jh-d'*PPG-ABP-only*'. Detect pulsatile signals based on their ``ECG_header.desc`` description variable. h0]hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-c'*PPG-ABP-only*'. Detect pulsatile signals based on their ``ECG_header.desc`` description variable.h/K+h0](hN'}}(h-j/h2jRubhh)}}(h}(h]h]h ]h ]h]uh+hgh-*PPG-ABP-only*h0]hN PPG-ABP-only}}(h-h>h2jbubah2jRubhN+'. Detect pulsatile signals based on their }}(h-+'. Detect pulsatile signals based on their h2jRubj)}}(h}(h]h]h ]h ]h]uh+hh-``ECG_header.desc``h0]hNECG_header.desc}}(h-h>h2jxubah2jRubhN description variable.}}(h- description variable.h2jRubeh2jGubah2jubj)}}(h}(h]h]h ]h ]h]uh+jh-'*User-defined-leads*'. Tell the algorithm (with ``PPG_ABP_idx property``) which signal indexes to process, from 1 to ``ECG_header.nsig`` h0]hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-'*User-defined-leads*'. Tell the algorithm (with ``PPG_ABP_idx property``) which signal indexes to process, from 1 to ``ECG_header.nsig``h/K.h0](hN'}}(h-j/h2jubhh)}}(h}(h]h]h ]h ]h]uh+hgh-*User-defined-leads*h0]hNUser-defined-leads}}(h-h>h2jubah2jubhN'. Tell the algorithm (with }}(h-'. Tell the algorithm (with h2jubj)}}(h}(h]h]h ]h ]h]uh+hh-``PPG_ABP_idx property``h0]hNPPG_ABP_idx property}}(h-h>h2jubah2jubhN-) which signal indexes to process, from 1 to }}(h--) which signal indexes to process, from 1 to h2jubj)}}(h}(h]h]h ]h ]h]uh+hh-``ECG_header.nsig``h0]hNECG_header.nsig}}(h-h>h2jubah2jubeh2jubah2jubeh2jubeh2jubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-S``PPG_ABP_idx`` — The indexes corresponding to pulsatile signals ``[] (default)``h/K1h0](j)}}(h}(h]h]h ]h ]h]uh+hh-``PPG_ABP_idx``h0]hN PPG_ABP_idx}}(h-h>h2jubah2jubhN4 — The indexes corresponding to pulsatile signals }}(h-4 — The indexes corresponding to pulsatile signals h2jubj)}}(h}(h]h]h ]h ]h]uh+hh-``[] (default)``h0]hN [] (default)}}(h-h>h2jubah2jubeh2jubj-)}}(h}(h]h]h ]h ]h]uh+j,h,hhhh-h>h/Nh0]hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-A value from 1 to ``ECG_header.nsig`` indicating the column indexes (of the signal matrix ``ECG``) where pulsatile signals are located. By default this task process all signals.h/K3h0](hNA value from 1 to }}(h-A value from 1 to h2j ubj)}}(h}(h]h]h ]h ]h]uh+hh-``ECG_header.nsig``h0]hNECG_header.nsig}}(h-h>h2j1ubah2j ubhN5 indicating the column indexes (of the signal matrix }}(h-5 indicating the column indexes (of the signal matrix h2j ubj)}}(h}(h]h]h ]h ]h]uh+hh-``ECG``h0]hNECG}}(h-h>h2jGubah2j ubhNP) where pulsatile signals are located. By default this task process all signals.}}(h-P) where pulsatile signals are located. By default this task process all signals.h2j ubeh2jubah2jubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-W``detectors`` — The PPG/ABP detection algorithms to use ``'all-detectors' (default)``h/K8h0](j)}}(h}(h]h]h ]h ]h]uh+hh- ``detectors``h0]hN detectors}}(h-h>h2jhubah2j]ubhN- — The PPG/ABP detection algorithms to use }}(h-- — The PPG/ABP detection algorithms to use h2j]ubj)}}(h}(h]h]h ]h ]h]uh+hh-``'all-detectors' (default)``h0]hN'all-detectors' (default)}}(h-h>h2j~ubah2j]ubeh2jubj-)}}(h}(h]h]h ]h ]h]uh+j,h,Nhhh-h>h/Nh0](hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-USelect which algorithm to use. A cell string or char with any of the following names:h/K:h0]hNUSelect which algorithm to use. A cell string or char with any of the following names:}}(h-jh2jubah2jubj)}}(h}(h]h ]h ]h]jjh]uh+jh-h>h0](j)}}(h}(h]h]h ]h ]h]uh+jh-'all-detectors' h0]hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-'all-detectors'h/K`__ h0]hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-;`'wavePPG' `__h/K>h0]h reference)}}(h}(h]h ]h ]refuri+http://dx.doi.org/10.1109/JBHI.2013.2267096h]h]name 'wavePPG'uh+jh-jh0]hN 'wavePPG'}}(h-h>h2jubah2jubah2jubah2jubj)}}(h}(h]h]h ]h ]h]uh+jh-B`'wabp' `__ h0]hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-@`'wabp' `__h/K@h0]j)}}(h}(h]h ]h ]j3http://www.physionet.org/physiotools/wag/wabp-1.htmh]h]name'wabp'uh+jh-j h0]hN'wabp'}}(h-h>h2jubah2jubah2jubah2jubeh2jubeh2jubeh2jwubh4hh)}}(h}(h] more aboutah]h ] more-aboutah ]h]uh+hh,hhhh-h>h/Kph0](hA)}}(h}(h]h]h ]h ]h]uh+h@h,hhhh- More Abouth/Kph0]hN More About}}(h-j4h2j,ubah2j ubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-8Here are some external references about pulse detection:h/Krh0]hN8Here are some external references about pulse detection:}}(h-jDh2j<ubah2j ubj)}}(h}(h]h ]h ]h]jjh]uh+jh,hhhh-h>h/Kth0]j)}}(h}(h]h]h ]h ]h]uh+jh,hhhh-**?? Add some** h/Nh0]hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-**?? Add some**h/Kth0]hstrong)}}(h}(h]h]h ]h ]h]uh+jkh-jih0]hN ?? Add some}}(h-h>h2jnubah2jaubah2jVubah2jLubah2j ubeh2jwubh)}}(h}(h]see alsoah]h ]see-alsoah ]h]uh+hh,hhhh-h>h/Kwh0](hA)}}(h}(h]h]h ]h ]h]uh+h@h,hhhh-See Alsoh/Kwh0]hNSee Also}}(h-jh2jubah2j}ubj-)}}(h}(h]h]h ]h ]h]uh+j,h,hhhh-h>h/Nh0]hU)}}(h}(h]h]h ]h ]h]uh+hTh,hh-^:doc:`ECGtask ` \| :doc:`QRS detection ` \| :doc:`examples `h/Kyh0](h)}}(h}(h]hh ]h ]reftypedochhh] refexplicith] refdomainh>hECGtaskuh+hh,hh-:doc:`ECGtask `h/Kyh0]j)}}(h}(h]h]h ]h ](j jeh]uh+hh-jh0]hNECGtask}}(h-h>h2jubah2jubah2jubhN | }}(h- \| h2jubh)}}(h}(h]hh ]h ]reftypedochhh] refexplicith] refdomainh>h QRS_detectionuh+hh,hh-$:doc:`QRS detection `h/Kyh0]j)}}(h}(h]h]h ]h ](j jeh]uh+hh-jh0]hN QRS detection}}(h-h>h2jubah2jubah2jubhN | }}(h- \| h2jubh)}}(h}(h]hh ]h ]reftypedochhh] refexplicith] refdomainh>hexamplesuh+hh,hh-:doc:`examples `h/Kyh0]j)}}(h}(h]h]h ]h ](j jeh]uh+hh-jh0]hNexamples}}(h-h>h2jubah2jubah2jubeh2jubah2j}ubeh2jwubeh2hubububsh}(h](results formatheh]h ](results-formatheh ]h]uh+hexpect_referenced_by_id}hh"sh,hhhh-h>h/Kjh0](hA)}}(h}(h]h]h ]h ]h]uh+h@h,hhhh-Results formath/Kjh0]hNResults format}}(h-j*h2j"ubah2hubhU)}}(h}(h]h]h ]h ]h]uh+hTh,hhhh-\The result file have the same format than :ref:`QRS detection task `.h/Klh0](hN*The result file have the same format than }}(h-*The result file have the same format than h2j2ubh)}}(h}(h]hh ]h ]reftyperefhhh] refexplicith] refdomainstdhqrs_det_result_formatuh+hh,hh-1:ref:`QRS detection task `h/Klh0]j_)}}(h}(h]h]h ]h ](j jOstd-refeh]uh+j^h-jQh0]hNQRS detection task}}(h-h>h2jTubah2jCubah2j2ubhN.}}(h-j;h2j2ubeh2hubeh2jwubj~jwh;h4jhjjjjj'j jj}uautofootnote_refs]current_sourceNrefnames}id_startKtransform_messages]hsystem_message)}}(h}(h]levelKh ]h ]sourcehh]lineKgh]typeINFOuh+jph-h>h0]hU)}}(h}(h]h]h ]h ]h]uh+hTh-h>h0]hN=Hyperlink target "pulse-det-result-format" is not referenced.}}(h-h>h2jubah2jsubaubasettingsdocutils.frontendValues)}}( pep_base_url https://www.python.org/dev/peps/embed_stylesheetexpose_internalsNinput_encoding_error_handlerstrictdebugNstrip_commentsN_disable_configNpep_referencesN source_linkNfootnote_backlinksKrfc_referencesNsyntax_highlightlongstrict_visitorNfile_insertion_enabled _config_files]input_encoding utf-8-sig language_codeendump_internalsN_sourcehwarning_streamNoutput_encoding_error_handlerj strip_classesN datestampN raw_enabledK generatorNrecord_dependenciesN sectnum_xformKgettext_compactcloak_email_addresses smart_quotes rfc_base_urlhttps://tools.ietf.org/html/ docinfo_xformKerror_encoding_error_handlerbackslashreplacepep_file_url_templatepep-%04derror_encodingcp850configN halt_levelK dump_settingsNdump_transformsN _destinationNauto_id_prefixid toc_backlinksentrysectsubtitle_xform id_prefixh>output_encodingutf-8 tab_widthKtrim_footnote_reference_spaceexit_status_levelKstrip_elements_with_classesN source_urlNh@N tracebackdump_pseudo_xmlN report_levelKdoctitle_xformenvNub footnote_refs}substitution_names} nametypes}(jNh8Nj{NjNhj$NjNjNusymbol_footnote_refs] current_lineNindirect_targets]hhsubstitution_defs}nameids}(jjh8h;j{j~jjhhj$j'jjjjusymbol_footnotes]h+hparse_messages]refids}h]h"asreporterNh-h>symbol_footnote_startK transformerN footnotes] citation_refs} citations] autofootnotes]autofootnote_startK decorationNh0]jwaub.