function varargout=rdmimic2wave(varargin) % % [tm,signal,Fs,recList,sigInfo]=rdmimic2wave(subjectID,clinicalTimeStamp,dataType,beginMinute,endMinute) % % % % Output Parameters: % % tm % Nx1 vector of doubles representing time in minutes if a match is % found, otherwise tm is empty. The time of the first index is an offset % from beginMinute. So that the total duration in minutes is: % % tm(end) - tm(1) = endMinute - beginMinute % % And the time of the clinical event (clinicalTimeStamp) in the waveform signal is given by % (to the closest minute): % % timeStamp = tm(1) + beginMinute % % % signal % NxM vector of doubles representing the signals from dataType that % match the timeStamp. If no match is found an empty matrix is % returned. % % Optional Ouput: % % Fs % A 1x1 double representing the sampling frequency (in Hz). % %recList % A Lx1 double specifying a list of valid subjectIDs or matched record. You can use this % field to find which IDs are in the matched waveform list (see below). If the % subjectID is defined in the function signature, recList will be % equal to the first found matched record if it exists. % % %sigInfo % A Mx1 structure containing meta information about the waverforms in the 'signal' output. % % % Input Parameters: % % subjectID % A 1x1 Double specifying a valid MIMIC II subject ID. For a list % of valid subjectID with matched waveform use this to query: % % [~,~,~,recList]=rdmimic2wave([],[],dataType); % % Once you have a valid subjectID and pass it to RDMIMI2WAVE, recList % will return the string name of the first matched record if any (empty otherwise). % % % clinicalTimeStamp % String specifying the clinical time of the event. This string % should have the following format (as described in % http://www.physionet.org/physiobank/database/mimic2wdb/matched/) : % % 'YYYY-MM-DD-hh-mm' % % Where: % YYYY = surrogate year % MM = month (01-12) % DD = day (01-31) % hh = real hour (00-23) % mm = minute (00-59) % % dataType (Optional) % String specifying what time of high resolution waveform to fetch. % Options are: 'numerics' and 'waveform'. Default is 'numerics'. % % % beginMinute (Optional) % 1x1 Double specifying time in minutes of % how much of the signal to get before clinicalTimeStamp occured. % Default is 60 minutes. % % endMinute (Optional) % 1x1 Double specifying time in minutes of % how much of the signal to get after clinicalTimeStamp occured. % Default is 60 minutes. % % % % % Example: %[tm,signal,Fs,recList,sigInfo]=rdmimic2wave(32805,'2986-12-15-10-00',[],0,2); %plot(tm,signal(:,2)) %title(['Found data in record: ' recList]) %legend(sigInfo(2).Description) % % Written by Ikaro Silva, 2013 % Last Modified: December 1, 2014 % % Version 1.1 % % Since 0.9.0 % % % % See also rdsamp, wfdbdesc %endOfHelp inputs={'subjectID','clinicalTimeStamp','dataType','beginWindow','endWindow'}; outputs={'tm','signal','Fs','recList','sigInfo'}; subjectID=[]; beginWindow=60; %beginWindow in minutes! endWindow=60; %endWindow in minutes! dataType='numerics'; dBName='mimic2wdb/matched/'; tm=[]; signal=[]; Fs=[]; sigInfo=[]; recList=[]; for n=1:nargin if(~isempty(varargin{n})) eval([inputs{n} '=varargin{n};']); end end persistent cachedDataType matched_id matched if(~strcmp(cachedDataType,dataType)) switch (dataType) case 'numerics' matched=urlread('http://www.physionet.org/physiobank/database/mimic2wdb/matched/RECORDS-numerics'); %case 'all' % Dont want to mess around with mixed sample rates yet... %%matched=urlread('http://www.physionet.org/physiobank/database/mimic2wdb/matched/RECORDS'); case 'waveform' matched=urlread('http://www.physionet.org/physiobank/database/mimic2wdb/matched/RECORDS-waveforms'); otherwise error(['Unknow dataType. Options are: ''numerics'', ''all'', or ''waveform''']); end cachedDataType=dataType; %Get patient ID list matched_id=regexprep(regexp(matched,'(\