Resources


Database Open Access

Respiratory and heart rate monitoring dataset from aeration study

Ella Frances Sophia Guy, Isaac Flett, Jaimey Anne Clifton, et al.

Respiratory and cardiovascular data collected from 20 subjects. Pressure, flow, aeration, and heart-rate data were collected during trials which included resting breathing, CPAP at varied PEEP settings, breath-holds, and forced expiratory manoeuvres.

Published: March 20, 2024. Version: 1.0.0

Database Restricted Access

CheXchoNet: A Chest Radiograph Dataset with Gold Standard Echocardiography Labels

Pierre Elias, Shreyas Bhave

Early detection of heart failure is vital for improving outcomes. The dataset contains 71,589 CXRs paired with gold standard labels from echocardiograms to enable the training of models to detect pathologies indicative of early stage heart failure.

chest x-rays heart failure early detection cardiac structural abnormalties deep learning

Published: March 20, 2024. Version: 1.0.0

Database Credentialed Access

MIMIC-CXR-JPG - chest radiographs with structured labels

Alistair Johnson, Matthew Lungren, Yifan Peng, et al.

Chest x-rays in JPG format with structured labels derived from the associated radiology report.

computer vision chest x-ray radiology mimic deep learning

Published: March 12, 2024. Version: 2.1.0

Database Credentialed Access

EchoNotes Structured Database derived from MIMIC-III (ECHO-NOTE2NUM)

Gloria Hyunjung Kwak, Dana Moukheiber, Mira Moukheiber, et al.

A structured echocardiogram database derived from 43,472 observational notes obtained during echocardiogram studies conducted in the intensive care unit at the Beth Israel Deaconess Medical Center between 2001 and 2012.

Published: Feb. 23, 2024. Version: 1.0.0

Database Credentialed Access

CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jasmine Teng, et al.

A corpus of cytology and histopathology reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.

nlp clinical documentation information extraction invasive fungal infections

Published: Feb. 20, 2024. Version: 1.0.2

Software Open Access

Software for computing Heart Rate Fragmentation

Madalena Costa

Heart rate fragmentation: a new method for the analysis of cardiac interbeat interval time series. The code provided can be run in Windows, Mac and Linux machines.

heart rate variability aging cardiovascular disease vagal tone time series analysis prediction of atrial fibrillation cardiac autonomic function prediction of cardiovascular events prediction of cognitive decline heart rate fragmentation

Published: Feb. 14, 2024. Version: 1.0.0

Database Credentialed Access

CORAL: expert-Curated medical Oncology Reports to Advance Language model inference

Madhumita Sushil, Vanessa Kennedy, Divneet Mandair, et al.

Medical oncology progress notes annotated with advanced, comprehensive oncology-relevant concepts and relationships.

artificial intelligence information extraction oncology natural language processing electronic health records large language models

Published: Feb. 7, 2024. Version: 1.0

Database Open Access

A Multi-Modal Satellite Imagery Dataset for Public Health Analysis in Colombia

Sebastian A Cajas, David Restrepo, Dana Moukheiber, et al.

Multi-Modal Satellite imagery Dataset in Colombia: A public health analysis with spatiotemporally aligned satellite images and its corresponding metadata across 81 municipalities (2016-2018), facilitating multimodal AI applications.

multimodality satellite imagery

Published: Jan. 30, 2024. Version: 1.0.0

Database Credentialed Access

RadCoref: Fine-tuning coreference resolution for different styles of clinical narratives

Yuxiang Liao, Hantao Liu, Irena Spasic

RadCoref is a small subset of MIMIC-CXR with manually annotated coreference mentions and clusters. Based on the annotated data, we fine-tuned a deep neural model and used it to annotate the whole MIMIC-CXR dataset. Both data are available.

natural language processing coreference resolution radiology

Published: Jan. 30, 2024. Version: 1.0.0

Database Credentialed Access

Annotation dataset of social determinants of health from MIMIC-III Clinical Care Database

Marco Guevara, Shan Chen, Spencer Thomas, et al.

Annotation dataset of social determinants of health from MIMC-III Clinical Care Database notes.

natural language processing social determinants of health

Published: Jan. 24, 2024. Version: 1.0.1