PhysioNet

Featured Resources

Database Credentialed Access

MIMIC-IV

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

Database of patients admitted to the Beth Israel Deaconess Medical Center

mimic critical care machine learning intensive care unit

Published: June 12, 2022. Version: 2.0

Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng

Chest radiographs in DICOM format with associated free-text reports.

mimic computer vision radiology machine learning chest x-rays natural language processing

Published: Sept. 19, 2019. Version: 2.0.0

Database Credentialed Access

eICU Collaborative Research Database

Tom Pollard, Alistair Johnson, Jesse Raffa, Leo Anthony Celi, Omar Badawi, Roger Mark

Multi-center database comprising deidentified health data associated with over 200,000 admissions to ICUs across the United States between 2014-2015.

telemedicine icu critical care

Published: April 15, 2019. Version: 2.0

Database Open Access

MIT-BIH Arrhythmia Database

Two-channel ambulatory ECG recordings, obtained from 47 subjects studied by the BIH Arrhythmia Laboratory between 1975 and 1979.

arrhythmia ecg

Published: Feb. 24, 2005. Version: 1.0.0

Visualize waveforms

Database Open Access

MIT-BIH Atrial Fibrillation Database

This database includes 25 long-term ECG recordings of human subjects with atrial fibrillation (mostly paroxysmal).

atrial fibrillation ecg

Published: Nov. 4, 2000. Version: 1.0.0

Visualize waveforms

Latest Resources

Database Open Access

VitalDB, a high-fidelity multi-parameter vital signs database in surgical patients

Hyung-Chul Lee, Chul-Woo Jung

VitalDB, a high-fidelity multi-parameter vital signs database in surgical patients

waveform anesthesia vitaldb intraoperative ecg biosignal

Published: Sept. 21, 2022. Version: 1.0.0

Database Credentialed Access

MIMIC-III Clinical Database CareVue subset

Alistair Johnson, Tom Pollard, Roger Mark

A subset of the MIMIC-III Clinical Database containing only patients admitted from 2001 - 2008.

Published: Sept. 21, 2022. Version: 1.4

Database Open Access

Gesture Recognition and Biometrics ElectroMyogram (GRABMyo)

Ning Jiang, Ashirbad Pradhan, Jiayuan He

Open-access dataset of electromyogram (EMG) recordings collected from the wrist and forearm muscles of 43 people while they performed hand gestures.

Published: Sept. 21, 2022. Version: 1.0.1

Visualize waveforms

Database Open Access

BIG IDEAs Lab Glycemic Variability and Wearable Device Data

Peter Cho, Juseong Kim, Brinnae Bent, Jessilyn Dunn

Glucose measurements and wrist-worn wearable sensor data from highnormoglycemic participants.

biomedical engineering pre-diabetes biomarkers

Published: Sept. 15, 2022. Version: 1.0.0

Database Open Access

Indian Institute of Science Fetal Heart Sound Database (IIScFHSDB)

Amrutha Bhaskaran, Manish Arora

The IIScFHSDB has 60 fetal phonocardiography recordings obtained in a hospital setting with the objective to provide fPCG recordings with clinical noise settings for development of signal processing algorithms for FHR determination and denoising fPCG

1 fetal heart sound 2 fhr

Published: Sept. 15, 2022. Version: 1.0

Database Credentialed Access

Nosocomial Risk Datasets from MIMIC-III

Travis Goodwin

Text-based Longitudinal Data for Predicting Nosocomial Disease Risk as used by CANTRIP.

deep learning pressure injury natural language processing risk prediction acute kidney injury anemia forecasting

Published: Sept. 15, 2022. Version: 1.0

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News

Multimodal Physiological Monitoring During Virtual Reality Piloting Tasks: CogPilot Data Challenge

News from: Multimodal Physiological Monitoring During Virtual Reality Piloting Tasks v1.0.0.

Sept. 8, 2022

We are pleased to announce the publication of a dataset comprising multimodal physiologic, flight performance, and user interaction data streams, collected as participants performed virtual-reality flight tasks of varying difficulty.

With over an hour of highly multimodal physiological and behavioral signals collected on each of the thirty-five participants, the dataset represents a unique opportunity to develop analytics and models linking an individual’s physiology to their behavior and performance in tasks of varying difficulty.

More data are being collected and will be uploaded to PhysioNet periodically. The data underpins the CogPilot Data Challenge, which explores how performance measurements and physiological data can be used to assess the competency of student pilots. To participate in the CogPilot Challenge, visit: https://pilotperformance.mit.edu/

Announcing the MIMIC-IV Waveforms

News from: MIMIC-IV Waveform Database v0.1.0.

Aug. 9, 2022

We are pleased to announce an initial release of a version (0.1.0) of the MIMIC-IV-Waveform module. These waveforms are a rich source of patient information - including ECG, PPG, and Blood Pressure signals - and can be linked to the clinical information in MIMIC-IV. This initial release contains 200 records from 198 patients. An upcoming release will include around 10,000 records.

The dataset was the subject of a workshop at IEEE EMBC in July of 2022, led by Peter Charlton, which demonstrated how to use the WFDB-Python package to extract and analyze waveform features. Executable notebooks and tutorial materials are available at: https://mimic.mit.edu/docs/iv/tutorials/waveform/ieee_workshop/ .

Rethinking Algorithm Performance Metrics for Artificial Intelligence in Diagnostic Medicine

July 29, 2022

Gari Clifford and Matthew Reyna from Emory University and Elaine Nsoesie from Boston University recently published an invited viewpoint in The Journal of the American Medical Association on "Rethinking Algorithm Performance Metrics for Artificial Intelligence in Diagnostic Medicine". The viewpoint focuses on how we often use the wrong optimization targets when applying machine learning to medical data, and how we can address this issue, and is part of the Gordon and Betty Moore Foundation's broader series on Diagnostic Excellence.

Server maintenance between 15-18 July 2022 (https://archive.physionet.org/ will be unavailable)

July 17, 2022

Our servers at MIT are undergoing and testing and maintenance work between Friday 15th and Monday 18th July 2022. PhysioNet (https://physionet.org/) will remain active during this period, but some services may be affected (for example, the archive website https://archive.physionet.org/).

Trust Markers with ORCID

June 30, 2022

Linking an ORCID to your PhysioNet profile can help us to quickly verify your identity, speeding up the process of gaining access to datasets such as MIMIC.

When reviewing an ORCID profile, we look out for “Trust Markers” which are pieces of information added to the profile by groups such publishers and employers.

To find out more about how PhysioNet is working with ORCID, see their blog post on how we are using the Trust Markers to streamline the data credentialing process.

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