Featured Resources


Database Credentialed Access

MIMIC-IV

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

Database of patients admitted to the Beth Israel Deaconess Medical Center

mimic critical care machine learning intensive care unit

Published: June 12, 2022. Version: 2.0


Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng

Chest radiographs in DICOM format with associated free-text reports.

mimic computer vision radiology chest x-rays machine learning natural language processing

Published: Sept. 19, 2019. Version: 2.0.0


Database Credentialed Access

eICU Collaborative Research Database

Tom Pollard, Alistair Johnson, Jesse Raffa, Leo Anthony Celi, Omar Badawi, Roger Mark

Multi-center database comprising deidentified health data associated with over 200,000 admissions to ICUs across the United States between 2014-2015.

telemedicine icu critical care

Published: April 15, 2019. Version: 2.0


Database Open Access

MIT-BIH Arrhythmia Database

Two-channel ambulatory ECG recordings, obtained from 47 subjects studied by the BIH Arrhythmia Laboratory between 1975 and 1979.

arrhythmia ecg

Published: Feb. 24, 2005. Version: 1.0.0

Visualize waveforms

Database Open Access

MIT-BIH Atrial Fibrillation Database

This database includes 25 long-term ECG recordings of human subjects with atrial fibrillation (mostly paroxysmal).

atrial fibrillation ecg

Published: Nov. 4, 2000. Version: 1.0.0

Visualize waveforms

Latest Resources


Database Open Access

MIMIC-IV Clinical Database Demo

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

An openly available subset of patients in the MIMIC-IV database.

mimic critical care electronic health record

Published: Jan. 31, 2023. Version: 2.2


Database Open Access

Pressure, flow, and dynamic thoraco-abdominal circumferences data for adults breathing under CPAP therapy

Ella Frances Sophia Guy, Jennifer Knopp, Theodore Lerios, James Geoffrey Chase

Dataset of pressure, flow, and dynamic abdominal and chest circumference for healthy people breathing with CPAP. Data was collected with PEEP settings of 0 (ZEEP), 4, and 8cmH2O at normal/resting, panting/short and deep/long breath patterns/rates.

Published: Jan. 25, 2023. Version: 1.0.0


Model Credentialed Access

Clinical-T5: Large Language Models Built Using MIMIC Clinical Text

Eric Lehman, Alistair Johnson

We train a T5-Base and T5-Large from scratch on MIMIC-III and MIMIC-IV. Additionally, we further pretrain T5-Base and SciFive on notes from MIMIC. We release these model weights on PhysioNet.

Published: Jan. 25, 2023. Version: 1.0.0


Software Open Access

Waveform Database Software Package (WFDB) for Python

Chen Xie, Lucas McCullum, Alistair Johnson, Tom Pollard, Brian Gow, Benjamin Moody

Tools for working with waveforms in Python.

waveform wfdb python

Published: Jan. 24, 2023. Version: 4.1.0


Database Credentialed Access

MIMICEL: MIMIC-IV Event Log for Emergency Department

Jia Wei, Zhipeng He, Chun Ouyang, Catarina Moreira

MIMIC-IV Event Log for Emergency Department

Published: Jan. 24, 2023. Version: 1.1.0


Challenge Contributor Review

BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization

Yanjun Gao, Timothy Miller, Majid Afshar, Dmitriy Dligach

This is the data storage for BioNLP Workshop Shared Task 1A: Problem List Summarization.

clinical natural language processing bionlp electronic health record summarization

Published: Jan. 19, 2023. Version: 1.0.0