Featured Resources


Software Open Access

Software for computing Heart Rate Fragmentation

Madalena Costa

Heart rate fragmentation: a new method for the analysis of cardiac interbeat interval time series. The code provided can be run in Windows, Mac and Linux machines.

heart rate variability aging cardiovascular disease vagal tone time series analysis prediction of atrial fibrillation cardiac autonomic function prediction of cardiovascular events prediction of cognitive decline heart rate fragmentation

Published: Feb. 14, 2024. Version: 1.0.0


Challenge Credentialed Access

SNOMED CT Entity Linking Challenge

Will Hardman, Mark Banks, Rory Davidson, Donna Truran, Nindya Widita Ayuningtyas, Hoa Ngo, Alistair Johnson, Tom Pollard

272 discharge notes from the MIMIC-IV-Note dataset annotated with SNOMED CT concepts.

snomed entity linking clinical annotation

Published: Dec. 19, 2023. Version: 1.0.0


Database Open Access

VitalDB, a high-fidelity multi-parameter vital signs database in surgical patients

Hyung-Chul Lee, Chul-Woo Jung

VitalDB, a high-fidelity multi-parameter vital signs database in surgical patients

waveform anesthesia vitaldb intraoperative biosignal ecg

Published: Sept. 21, 2022. Version: 1.0.0


Database Credentialed Access

MIMIC-IV

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

Large database of de-identified health information from patients admitted to Beth Israel Deaconess Medical Center

mimic critical care machine learning intensive care unit

Published: Jan. 6, 2023. Version: 2.2


Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng

Chest radiographs in DICOM format with associated free-text reports.

mimic computer vision chest x-rays machine learning radiology natural language processing

Published: Sept. 19, 2019. Version: 2.0.0


Database Credentialed Access

BRAX, a Brazilian labeled chest X-ray dataset

Eduardo Pontes Reis, Joselisa Paiva, Maria Carolina Bueno da Silva, Guilherme Alberto Sousa Ribeiro, Victor Fornasiero Paiva, Lucas Bulgarelli, Henrique Lee, Paulo Victor dos Santos, vanessa brito, Lucas Amaral, Gabriel Beraldo, Jorge Nebhan Haidar Filho, Gustavo Teles, Gilberto Szarf, Tom Pollard, Alistair Johnson, Leo Anthony Celi, Edson Amaro

BRAX contains 24,959 chest radiography exams and 40,967 images acquired in a large general Brazilian hospital. All images have been read by trained radiologists and 14 labels were derived from Brazilian Portuguese reports using NLP.

chest x-ray dataset artificial intelligence

Published: June 17, 2022. Version: 1.1.0


Latest Resources


Database Credentialed Access

EchoNotes Structured Database derived from MIMIC-III (ECHO-NOTE2NUM)

Gloria Hyunjung Kwak, Dana Moukheiber, Mira Moukheiber, Lama Moukheiber, Sulaiman Moukheiber, Neel Butala, Leo Anthony Celi, Christina Chen

A structured echocardiogram database derived from 43,472 observational notes obtained during echocardiogram studies conducted in the intensive care unit at the Beth Israel Deaconess Medical Center between 2001 and 2012.

Published: Feb. 23, 2024. Version: 1.0.0


Database Credentialed Access

CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports

Vlada Rozova, Anna Khanina, Jasmine Teng, Joanne Teh, Leon Worth, Monica Slavin, karin thursky, Karin Verspoor

A corpus of cytology and histopathology reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.

nlp information extraction clinical documentation invasive fungal infections

Published: Feb. 20, 2024. Version: 1.0.2


Database Credentialed Access

MIMIC-IV on FHIR

Alex Bennett, Joshua Wiedekopf, Hannes Ulrich, Philip van Damme, Alistair Johnson

MIMIC-IV and MIMIC-IV-ED data mapped into FHIR resources.

mimic-iv fhir electronic health record

Published: Feb. 20, 2024. Version: 1.0


Software Open Access

Software for computing Heart Rate Fragmentation

Madalena Costa

Heart rate fragmentation: a new method for the analysis of cardiac interbeat interval time series. The code provided can be run in Windows, Mac and Linux machines.

heart rate variability aging cardiovascular disease vagal tone time series analysis prediction of atrial fibrillation cardiac autonomic function prediction of cardiovascular events prediction of cognitive decline heart rate fragmentation

Published: Feb. 14, 2024. Version: 1.0.0


Database Credentialed Access

CORAL: expert-Curated medical Oncology Reports to Advance Language model inference

Madhumita Sushil, Vanessa Kennedy, Divneet Mandair, Brenda Miao, Travis Zack, Atul Butte

Medical oncology progress notes annotated with advanced, comprehensive oncology-relevant concepts and relationships.

artificial intelligence electronic health records information extraction natural language processing large language models oncology

Published: Feb. 7, 2024. Version: 1.0


Database Open Access

A Multi-Modal Satellite Imagery Dataset for Public Health Analysis in Colombia

Sebastian A Cajas, David Restrepo, Dana Moukheiber, Kuan Ting Kuo, Chenwei Wu, David Santiago Garcia Chicangana, Atika Rahman Paddo, Mira Moukheiber, Lama Moukheiber, Sulaiman Moukheiber, Saptarshi Purkayastha, Diego M Lopez, Po-Chih Kuo, Leo Anthony Celi

Multi-Modal Satellite imagery Dataset in Colombia: A public health analysis with spatiotemporally aligned satellite images and its corresponding metadata across 81 municipalities (2016-2018), facilitating multimodal AI applications.

multimodality satellite imagery

Published: Jan. 30, 2024. Version: 1.0.0