Featured Resources

Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng

Chest radiographs in DICOM format with associated free-text reports.

mimic natural language processing machine learning computer vision radiology chest x-rays

Published: Sept. 19, 2019. Version: 2.0.0

Database Credentialed Access

eICU Collaborative Research Database

Tom Pollard, Alistair Johnson, Jesse Raffa, Leo Anthony Celi, Omar Badawi, Roger Mark

The eICU Collaborative Research Database is a multi-center database comprising deidentified health data associated with over 200,000 admissions to ICUs across the United States between 2014-2015. The database includes vital sign measurements, care p…

telemedicine critical care icu

Published: April 15, 2019. Version: 2.0

Database Credentialed Access

MIMIC-III Clinical Database

Alistair Johnson, Tom Pollard, Roger Mark

MIMIC-III is a large, freely-available database comprising deidentified health-related data associated with over forty thousand patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012.

The databa…

critical care natural language processing machine learning intensive care clinical

Published: Sept. 4, 2016. Version: 1.4

Database Open Access

MIT-BIH Arrhythmia Database

The MIT-BIH Arrhythmia Database contains 48 half-hour excerpts of two-channel ambulatory ECG recordings, obtained from 47 subjects studied by the BIH Arrhythmia Laboratory between 1975 and 1979. Twenty-three recordings were chosen at random from a s…

ecg arrhythmia

Published: Feb. 24, 2005. Version: 1.0.0

Visualize waveforms

Database Open Access

MIT-BIH Atrial Fibrillation Database

This database includes 25 long-term ECG recordings of human subjects with atrial fibrillation (mostly paroxysmal).

ecg atrial fibrillation

Published: Nov. 4, 2000. Version: 1.0.0

Visualize waveforms

Software Open Access

Generalized Multiscale Entropy Analysis

The method of generalized multiscale entropy (GMSE) analysis is useful for investigating complexity in physiologic signals and other series that have correlations at multiple (time) scales. It represents a generalization of the original method of mu…

entropy complexity

Published: Feb. 2, 2019. Version: 1.0.0

Latest Resources

Database Open Access

Motion and heart rate from a wrist-worn wearable and labeled sleep from polysomnography

Olivia Walch

Contains motion data and heart rate measurements from Apple Watches from sleeping people undergoing polysomnography (PSG), and the labeled sleep stages scored from the PSG recordings (wake, N1-3 sleep, REM sleep).

sleep polysomnography

Published: Oct. 8, 2019. Version: 1.0.0

Database Credentialed Access

MedNLI - A Natural Language Inference Dataset For The Clinical Domain

Chaitanya Shivade

This is a resource for training machine learning models for language inference in the medical domain.

natural language inference recognizing textual entailment

Published: Oct. 1, 2019. Version: 1.0.0

Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng

Chest radiographs in DICOM format with associated free-text reports.

mimic natural language processing machine learning computer vision radiology chest x-rays

Published: Sept. 19, 2019. Version: 2.0.0

Database Open Access

PhysioZoo - mammalian NSR databases

Ori Shemla, Joachim Behar

PhysioZoo is a collaborative platform dedicated to the study of the heart rate variability in electrophysiological recordings from mammals

ecg heart rate variabillity electrophysiology mammals

Published: Aug. 27, 2019. Version: 1.0.0

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Challenge Open Access

Early Prediction of Sepsis from Clinical Data -- the PhysioNet Computing in Cardiology Challenge 2019

Matthew Reyna, Chris Josef, Russell Jeter, Supreeth Shashikumar, Benjamin Moody, Ashish Sharma, Shamim Nemati, Gari Clifford

The 2019 PhysioNet Computing in Cardiology Challenge invites participants to predict sepsis in clinical data

prediction challenge sepsis

Published: Aug. 5, 2019. Version: 1.0.0

Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng

Chest radiographs in JPG format with structured labels extracted from the free-text reports.

mimic natural language processing machine learning computer vision radiology chest x-rays

Published: Aug. 2, 2019. Version: 1.0.0

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News

MIMIC-III available on the cloud

News from: MIMIC-III Clinical Database v1.4.

Sept. 30, 2019

The MIMIC-III database is now available on two major cloud platforms: Google Cloud Platform (GCP) and Amazon Web Services (AWS). To access the data on the cloud, simply add the relevant cloud identifier to your PhysioNet profile. Further instructions are available on the MIMIC-III website.

Tutorials are available for using MIMIC-III with BigQuery (GCP) and using MIMIC-III with Athena (AWS).

MIMIC-CXR Database v2.0.0 now available!

News from: MIMIC-CXR Database v2.0.0.

Sept. 27, 2019

The MIMIC-CXR Database has been updated to v2.0.0. The database now contains DICOM format image files and free-text radiology reports. All data has been de-identified.

Credentialed users can access the data after signing the data use agreement.

Some users may have preferred the JPG format images for convenience, despite the information loss when storing the images in this format. We plan to release a distinct project on PhysioNet which contains the same images as MIMIC-CXR but in JPG format. This distinct project will also contain structured labels derived from the radiology report. Stay tuned!

Official results for the 2019 PhysioNet Challenge

News from: Early Prediction of Sepsis from Clinical Data -- the PhysioNet Computing in Cardiology Challenge 2019 v1.0.0.

Sept. 17, 2019

Official results for the 2019 Challenge and Hackathon are now available.

MIMIC-CXR Database files are unavailable

News from: MIMIC-CXR Database v1.0.0.

Aug. 26, 2019

Due to technical issues, the chest x-rays are currently unavailable. We apologize for the inconvenience.

Pre-conference hackathon at Computing in Cardiology 2019

News from: Early Prediction of Sepsis from Clinical Data -- the PhysioNet Computing in Cardiology Challenge 2019 v1.0.0.

July 8, 2019

Thanks to our sponsors, a pre-conference hackathon (with prize(s)) will take place on Sunday 8th September in Singapore. Registration is required. Rules and more information can be found here .

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