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Challenge Credentialed Access

SNOMED CT Entity Linking Challenge

Will Hardman, Mark Banks, Rory Davidson, Donna Truran, Nindya Widita Ayuningtyas, Hoa Ngo, Alistair Johnson, Tom Pollard

272 discharge notes from the MIMIC-IV-Note dataset annotated with SNOMED CT concepts.

snomed entity linking clinical annotation

Published: Dec. 19, 2023. Version: 1.0.0

Database Open Access

VitalDB, a high-fidelity multi-parameter vital signs database in surgical patients

Hyung-Chul Lee, Chul-Woo Jung

VitalDB, a high-fidelity multi-parameter vital signs database in surgical patients

waveform anesthesia vitaldb intraoperative biosignal ecg

Published: Sept. 21, 2022. Version: 1.0.0

Database Credentialed Access

MIMIC-IV

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark

Large database of de-identified health information from patients admitted to Beth Israel Deaconess Medical Center

critical care intensive care unit mimic machine learning

Published: Jan. 6, 2023. Version: 2.2

Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng

Chest radiographs in DICOM format with associated free-text reports.

computer vision chest x-rays natural language processing radiology mimic machine learning

Published: Sept. 19, 2019. Version: 2.0.0

Database Credentialed Access

BRAX, a Brazilian labeled chest X-ray dataset

Eduardo Pontes Reis, Joselisa Paiva, Maria Carolina Bueno da Silva, Guilherme Alberto Sousa Ribeiro, Victor Fornasiero Paiva, Lucas Bulgarelli, Henrique Lee, Paulo Victor dos Santos, vanessa brito, Lucas Amaral, Gabriel Beraldo, Jorge Nebhan Haidar Filho, Gustavo Teles, Gilberto Szarf, Tom Pollard, Alistair Johnson, Leo Anthony Celi, Edson Amaro

BRAX contains 24,959 chest radiography exams and 40,967 images acquired in a large general Brazilian hospital. All images have been read by trained radiologists and 14 labels were derived from Brazilian Portuguese reports using NLP.

chest x-ray dataset artificial intelligence

Published: June 17, 2022. Version: 1.1.0

Database Credentialed Access

eICU Collaborative Research Database

Tom Pollard, Alistair Johnson, Jesse Raffa, Leo Anthony Celi, Omar Badawi, Roger Mark

Multi-center database comprising deidentified health data associated with over 200,000 admissions to ICUs across the United States between 2014-2015.

telemedicine icu critical care

Published: April 15, 2019. Version: 2.0

Latest Resources

Database Restricted Access

DREAMT: Dataset for Real-time sleep stage EstimAtion using Multisensor wearable Technology

Ke Wang, Jiamu Yang, Ayush Shetty, Jessilyn Dunn

Dataset for Real-time sleep stage EstimAtion using Multisensor wearable Technology

biomedical sleep disorders time series classification wearable

Published: Sept. 13, 2024. Version: 1.0.1

Database Credentialed Access

MIMIC-IV-Ext-MDS-ED: Multimodal Decision Support in the Emergency Department - a Benchmark Dataset for Diagnoses and Deterioration Prediction in Emergency Medicine

Juan Miguel Lopez Alcaraz, Nils Strodthoff

MIMIC-IV-ext-MDS-ED proposes a dataset to benchmark multimodal decision support in the emergency department. It features multimodal input (including ECG waveforms) and a comprehensive set of prediction targets (diagnoses and deterioration prediction)

emergency department ecg multimodal benchmark diagnoses prediction deterioration prediction

Published: Sept. 12, 2024. Version: 1.0.0

Database Open Access

MUSIC (Sudden Cardiac Death in Chronic Heart Failure)

Alba Martin-Yebra, Juan Pablo Martínez, Pablo Laguna

The MUSIC study is a prospective, multicentre, longitudinal study designed to assess risk predictors of cardiac mortality and sudden cardiac death in ambulatory patients with chronic heart failure.

Published: Sept. 11, 2024. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

MIMIC-IV-Ext-BHC: Labeled Clinical Notes Dataset for Hospital Course Summarization

Asad Aali, Dave Van Veen, Yamin Arefeen, Jason Hom, Christian Bluethgen, Eduardo Pontes Reis, Sergios Gatidis, Namuun Clifford, Joseph Daws, Arash Tehrani, Jangwon Kim, Akshay Chaudhari

This dataset presents a collection of preprocessed and labeled clinical notes derived from "MIMIC-IV-Note", and aims to facilitate the development of ML models focused on summarizing brief hospital courses (BHC) from clinical notes.

clinical notes natural language processing brief hospital course machine learning text summarization

Published: Sept. 10, 2024. Version: 1.0.0

Database Contributor Review

Salzburg Intensive Care database (SICdb), a freely accessible intensive care database

Niklas Rodemund, Andreas Kokoefer, Bernhard Wernly, Crispiana Cozowicz

The SICdb dataset, version 1.0.8 contains 27350 admissions to an ICU in an Austrian tertiary care institution.

clinical intensive care critical care open data machine learning

Published: Sept. 10, 2024. Version: 1.0.8

Database Credentialed Access

MIMIC-IV-ECG-Ext-ICD: Diagnostic labels for MIMIC-IV-ECG

Nils Strodthoff, Juan Miguel Lopez Alcaraz, Wilhelm Haverkamp

Dataset that links ECG records from MIMIC-IV-ECG to ED discharge and hospital discharge diagnoses, which enables to train general ECG prediction models based on clinical labels and facilitates the retrieval of further clinical metadata from MIMIC-IV.

mimic electrocardiography machine learning

Published: Aug. 30, 2024. Version: 1.0.1

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News

Delays in reviewing applications for credentialed access

June 17, 2024

As a result of staffing changes in our research group, applications for credentialed access are likely to be subject to significant delays. We are doing our best to deal with the waitlist quickly, handling applications in the order in which they are received. To help ensure that your application is successful, please remember to:

Include a copy of your CITI training report (not the certificate).
Remind your reference to reply promptly when contacted.
Check your application details are correct before submitting.
Add an institutional or educational email address as your primary email.

We apologize for the inconvenience. Please bear with us during this busy time!

George B. Moody PhysioNet Challenge 2024 is teaming up with Data Science Africa

May 18, 2024

The George B. Moody PhysioNet Challenge 2024 is teaming up with Data Science Africa (DSA) to innovate cardiac care through signal processing & machine learning at Nyeri, Kenya, for DSA's 10 year anniversary in June 2024.

DSA aims to create a hub in the network of data science researchers across Africa and strengthen the African data science community. #DSA2024Nyeri https://www.datascienceafrica.org/dsa2024nyeri/blog/summer-school

Guidelines for creating datasets and models from MIMIC

News from: MIMIC-IV v2.2.

April 24, 2024

We recognize that there is value in creating datasets or models that are either derived from MIMIC or which augment MIMIC in some way (for example, by adding annotations). Here are some guidelines on creating these datasets and models:

Any derived datasets or models should be treated as containing sensitive information. If you wish to share these resources, they should be shared on PhysioNet under the same agreement as the source data.
If you would like to use the MIMIC acronym in your project name, please include the letters “Ext” (for example, MIMIC-IV-Ext-YOUR-DATASET"). Ext may either indicate “extracted” (e.g. a derived subset) or “extended” (e.g. annotations), depending on your use case.

Network issues at MIT, impacting the availability of PhysioNet

April 9, 2024

We are currently experiencing network issues at MIT, impacting the availability of PhysioNet services. We apologize for any inconvenience this may cause and are working to resolve the issue as soon as we can.

George B. Moody PhysioNet Challenge 2024: Challenge Update

March 14, 2024

We are delighted to announce that the George B. Moody PhysioNet Challenges are partnering with Data Science Africa (DSA) and the IEEE Signal Processing Society's Challenges and Data Collections Committee (CDCC). The IEEE CDCC is supporting this year’s Challenge with additional cash prizes for participating teams from Africa and the Challenge organizers will be running a workshop at this year's annual DSA meeting in Kenya. In connection with this, the Challenge organizers will be running a workshop at DSA in Kenya from June 2-5th 2024. Please note that we are also accepting (and scoring) entries, and there are two deadlines coming up - April 8th to submit a preliminary entry to the Challenge and April 15th to submit a (placeholder) abstract to CinC.

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