Resources


Database Credentialed Access

MS-CXR-T: Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing

Shruthi Bannur, Stephanie Hyland, Qianchu Liu, Fernando Pérez-García, Max Ilse, Daniel Coelho de Castro, Benedikt Boecking, Harshita Sharma, Kenza Bouzid, Anton Schwaighofer, Maria Teodora Wetscherek, Hannah Richardson, Tristan Naumann, Javier Alvarez Valle, Ozan Oktay

The MS-CXR-T is a multimodal benchmark that enhances the MIMIC-CXR v2 dataset by including expert-verified annotations. Its goal is to evaluate biomedical visual-language processing models in terms of temporal semantics extracted from image and text.

multimodal radiology chest x-ray cxr disease progression vision-language processing

Published: March 17, 2023. Version: 1.0.0

Database Credentialed Access

GLOBEM Dataset: Multi-Year Datasets for Longitudinal Human Behavior Modeling Generalization

Xuhai Xu, Han Zhang, Yasaman Sefidgar, Yiyi Ren, Xin Liu, Woosuk Seo, Jennifer Brown, Kevin Kuehn, Mike Merrill, Paula Nurius, Shwetak Patel, Tim Althoff, Margaret Morris, Eve Riskin, Jennifer Mankoff, Anind Dey

GLOBEM datasets contain the first released multi-year mobile and wearable sensing datasets from 2018 to 2021, containing 705 person-years and 497 unique participants.

health ubiquitous computing well-being passive mobile sensing human behavior modeling

Published: March 14, 2023. Version: 1.1

Database Credentialed Access

SCRIPT CarpeDiem Dataset: demographics, outcomes, and per-day clinical parameters for critically ill patients with suspected pneumonia

Nikolay Markov, Catherine A Gao, Thomas Stoeger, Anna Pawlowski, Mengjia Kang, Prasanth Nannapaneni, Rogan Grant, Luke Rasmussen, Daniel Schneider, Justin Starren, Richard Wunderink, GR Scott Budinger, Alexander Misharin, Benjamin Singer, NU SCRIPT Study Investigators

SCRIPT seeks to delineate the host/pathogen interactions during pneumonia using multiomic analysis of bronchoalveolar lavage fluid joined with clinical data and physician adjudication.

Published: March 13, 2023. Version: 1.1.0

Database Credentialed Access

A Brazilian Multilabel Ophthalmological Dataset (BRSET)

Luis Filipe Nakayama, Mariana Goncalves, Lucas Zago Ribeiro, Helen Santos, Daniel Ferraz, Fernando Malerbi, Leo Anthony Celi, Caio Regatieri

This is the first Brazilian Multilabel Ophthalmological Dataset with demographic information and retinal photos labeled images according to anatomical parameters, quality control, and presumed diagnosis.

dataset ophthalmology retina

Published: March 8, 2023. Version: 1.0.0

Database Open Access

BIG IDEAs Lab Glycemic Variability and Wearable Device Data

Peter Cho, Juseong Kim, Brinnae Bent, Jessilyn Dunn

Glucose measurements and wrist-worn wearable sensor data from highnormoglycemic participants.

biomedical engineering biomarkers pre-diabetes

Published: March 6, 2023. Version: 1.1.0

Database Credentialed Access

MIMICEL: MIMIC-IV Event Log for Emergency Department

Jia Wei, Zhipeng He, Chun Ouyang, Catarina Moreira

MIMIC-IV Event Log for Emergency Department

Published: March 6, 2023. Version: 2.0.0

Database Credentialed Access

Generalized Image Embeddings for the MIMIC Chest X-Ray dataset

Andrew Sellergren, Atilla Kiraly, Tom Pollard, Wei-Hung Weng, Yun Liu, Akib Uddin, Christina Chen

This database contains compact information-rich embeddings of the MIMIC-CXR Database v2.0.0 using the CXR Foundation API v1.0.

Published: Feb. 22, 2023. Version: 1.0

Database Open Access

I-CARE: International Cardiac Arrest REsearch consortium Database

Edilberto Amorim, Wei-Long Zheng, Jong Woo Lee, Susan Herman, Mohammad Ghassemi, Adithya Sivaraju, Nicolas Gaspard, Jeannette Hofmeijer, Michel J A M van Putten, Matthew Reyna, Gari Clifford, Brandon Westover

The clinical and EEG data for this dataset originates from seven academic hospitals in the U.S. and Europe led by investigators part of the International Cardiac Arrest REsearch consortium (I-CARE).

Published: Feb. 21, 2023. Version: 1.0

Visualize waveforms

Database Contributor Review

Salzburg Intensive Care database (SICdb), a freely accessible intensive care database

Niklas Rodemund, Andreas Kokoefer, Bernhard Wernly, Crispiana Cozowicz

The SICdb dataset, version 1.0.5 contains 27386 admissions to an ICU in an Austrian tertiary care institution.

clinical intensive care machine learning critical care

Published: Feb. 14, 2023. Version: 1.0.5

Database Open Access

In-Gauge and En-Gage: Understanding Occupants' Behaviour, Engagement, Emotion, and Comfort Indoors with Heterogeneous Sensors and Wearables

Nan Gao, Max Marschall, Jane Burry, Simon Watkins, Flora Salim

The project aims to understand occupants’ behaviour, engagement, emotion, and comfort indoors with heterogeneous sensors and wearables.

heart rate electrodermal activity environmental sensing thermal comfort modelling physiological signals occupant behaviour sensing emotion sensing human behavoural modelling smart building

Published: Feb. 13, 2023. Version: 1.0.0