Resources


Software Open Access

Multiscale Entropy Analysis

The method of multiscale entropy (MSE) analysis is useful for investigating complexity in physiologic signals and other series that have correlations at multiple (time) scales.

entropy complexity

Published: Aug. 4, 2004. Version: 1.0

Database Credentialed Access

CXR-Align: A Benchmark for CXR-Report Alignment with Negations

Hanbin Ko

CXR-Align is a benchmark dataset created to evaluate vision-language models' capability to interpret negations in chest X-ray (CXR) reports, featuring systematically modified reports from MIMIC-CXR.

Published: Aug. 21, 2025. Version: 1.0.0

Database Credentialed Access

Bridge2AI-Voice: An ethically-sourced, diverse voice dataset linked to health information

Yael Bensoussan, Alexandros Sigaras, Anais Rameau, Olivier Elemento, Maria Powell, David Dorr, Philip Payne, Vardit Ravitsky, Jean-Christophe Bélisle-Pipon, Alistair Johnson, Ruth Bahr, Stephanie Watts, Donald Bolser, Jennifer Siu, Jordan Lerner-Ellis, Frank Rudzicz, Micah Boyer, Samantha Salvi Cruz, Yassmeen Abdel-Aty, Toufeeq Ahmed Syed, James Anibal, Stephen Aradi, Ana Sophia Martinez, Shaheen Awan, Steven Bedrick, Alexander Bernier, Isaac Bevers, Rahul Brito, Selina Casalino, John Costello, Iris De Santiago, Enrique Diaz-Ocampo, Mohamed Ebraheem, Ellie Eiseman, Mahmoud Elmahdy, Emily Evangelista, Kenneth Fletcher, Hortense Gallois, Alexander Gelbard, Anna Goldenberg, Karim Hanna, William Hersh, Lochana Jayachandran, Kaley Jenney, Kathy Jenkins, Stacy Jo, Ayush Kalia, Andrea Krussel, Elisa Lapadula, Chloe Loewith, Radhika Mahajan, Vrishni Maharaj, Siyu Miao, Matthew Mifsud, Marian Mikhael, Elijah Moothedan, Yosef Nafii, Tempestt Neal, Karlee Newberry, Evan Ng, Christopher Nickel, Megan Urbano, Trevor Pharr, Matthew Pontell, Claire Premi-Bortolotto, JM Rahman, Sarah Rohde, Laurie Russell, Suketu Shah, Ahmed Shawkat, Elizabeth Silberholz, Duncan Sutherland, Venkata Swarna Mukhi, Jeffrey Tang, Jamie Toghranegar, Kimberly Vinson, Claire Wilson, Madeleine Zanin, Xijie Zeng, Theresa Zesiewicz, Robin Zhao, Pantelis Zisimopoulos, Satrajit Ghosh

A dataset of features from voice recordings and metadata to enable the development, benchmarking, and validation of clinically applicable machine-learning models for diagnosing a wide range of health conditions.

voice bridge2ai

Published: Aug. 18, 2025. Version: 2.0.1

Database Restricted Access

Microbiological, Immunological and Biochemical Characteristics of the Development of Ventilator Associated Pneumonia

Natalia Sanabria-Herrera, Ingrid Gisell Bustos Moya, Luis Felipe Reyes

This study explores the respiratory microbiome's role in nosocomial lower respiratory tract infections in ICU patients. Conducted in Chía, Colombia, revealing the microbiome's impact on disease progression.

Published: June 24, 2025. Version: 1.1.0

Database Credentialed Access

MeDiSumQA: Patient-Oriented Question-Answer Generation from Discharge Letters

Amin Dada, Osman Alperen Koras, Marie Bauer, Amanda Butler, Kaleb Smith, Jens Kleesiek, Julian Friedrich

MeDiSumQA is a dataset of patient-oriented QA pairs from MIMIC-IV discharge summaries, designed to evaluate LLMs in generating safe, patient-friendly medical responses for clinical QA and healthcare communication.

Published: May 5, 2025. Version: 1.0.0

Database Credentialed Access

AIPatient KG: MIMIC-III and CORAL Electronic Health Records based Patient Knowledge Graph

Lizhou Fan, Huizi Yu

This project integrates MIMIC-III and CORAL electronic health records into knowledge graphs to improve medical analysis and enhance decision-making capabilities. Resources include two knowledge graph snapshots and two question-and-answering datasets.

Published: April 15, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-III-Ext-tPatchGNN

Chenlong Yin, Weijia Zhang

The processed MIMIC-III dataset for the benchmark of Irregular Multivariate Time Series Forecasting: A Transformable Patching Graph Neural Networks Approach.

Published: April 9, 2025. Version: 1.0.0

Database Credentialed Access

Multimodal Clinical Monitoring in the Emergency Department (MC-MED)

Aman Kansal, Emma Chen, Tom Jin, Pranav Rajpurkar, David Kim

A multimodal dataset of deidentified clinical and physiological data from emergency department visits, aimed at enabling research on patient outcomes, care processes, and the impact of continuous monitoring on treatment during and after the COVID-19.

Published: March 3, 2025. Version: 1.0.0

Database Open Access

Synthetic Mention Corpora for Disease Entity Recognition and Normalization

Kuleen Sasse, John David Osborne

We present the Synthetic Mention Corpora for Disease Entity Recognition and Normalization, containing 128000 disease mentions from the UMLS disorder group, generated by an LLM. This corpus aims to improve these tasks in biomedical and clinical texts.

nlp named entity recognition machine learning data augmentation entity normalization

Published: Feb. 3, 2025. Version: 1.0.0

Database Restricted Access

MIMIC-IV-Ext-DiReCT

Bowen Wang, Jiuyang Chang, Yiming Qian

A diagnostic reasoning dataset designed to evaluate the performance of large language models in aligning with human doctors when making diagnoses from clinical notes.

Published: Jan. 21, 2025. Version: 1.0.0