Resources


Challenge Credentialed Access

ArchEHR-QA: BioNLP at ACL 2025 Shared Task on Grounded Electronic Health Record Question Answering

Sarvesh Soni, Dina Demner-Fushman

A dataset for grounded question answering (QA) from electronic health records (EHRs).

electronic health record question answering clinicians patient portals

Published: April 11, 2025. Version: 1.2

Database Restricted Access

Electrocardiogram-Capable Smartwatches: Assessing Their Clinical Accuracy and Application

Joaquin Recas, Mauro Buelga Suárez, Sergio González-Cabeza, Mario Sanz-Guerrero, Marian Diaz-Vicente, Alfonso Rebolleda, Luis Piñuel Moreno, Gonzalo Luis Alonso Salinas

This database allows the study of the feasibility of using ECG-capable smartwatches as diagnostic tools, focusing on their compliance with clinical standards and their ability to measure critical ECG parameters beyond AF detection.

ischemia fitbit sense ambulatory samsung galaxy watch st-segment apple watch withings scanwatch smartwatch

Published: April 9, 2025. Version: 1.0.0

Database Restricted Access

ALarms, Outcomes Telemetry with Timing (ALOTT): a Bedside-EMR Database

John Lawrence, Mike Rayo, Timothy Huerta

Carescape is a deidentified 9 month period of high resolution telemetry data linked to Electronic Medical Records.

Published: March 19, 2025. Version: 1.0.0

Database Restricted Access

OpenOximetry Repository

Nicholas Fong, Michael Lipnick, Philip Bickler, John Feiner, Tyler Law

A repository of matched arterial oxygen and pulse oximeter readings obtained under controlled conditions, with high-frequency physiologic waveforms and skin color measurements.

Published: Feb. 28, 2025. Version: 1.1.1

Database Credentialed Access

MIMIC-IV-Ext-GPT-3_5-Generated-Discharge-Summaries-for-Low-Resource-Codes

Matúš Falis, Aryo Pradipta Gema, Hang Dong, Luke Daines, Siddharth Basetti, Michael Holder, Rose Penfold, Alexandra Birch, Beatrice Alex

9,606 Synthetic Discharge Summaries generated by GPT-3.5 based on combinations of ICD-10-code descriptions associated with real discharge summaries in MIMIC-IV. Focus on low resource codes.

icd coding large language model data augmentation

Published: Dec. 16, 2024. Version: 1.0.0

Database Credentialed Access

Northwestern ICU (NWICU) database

Dana Moukheiber, William Temps, Bhadrappa Molgi, Yikuan Li, Alice Lu, Prasanth Nannapaneni, Abdulrahman Chahin, Sicheng Hao, Felipe Torres Fabregas, Leo Anthony Celi, Adrian Wong, Maxwell Lloyd, Xavier Borrat Frigola, Hyung-Chul Lee, Daniel Schneider, Tom Pollard, Yuan Luo, Abel Kho, Roger Mark

A freely available COVID-rich ICU database comprising de-identified health-related data from Northwestern Memorial Health Center (NHMC).

Published: Nov. 19, 2024. Version: 0.1.0

Database Contributor Review

Chest Computed Tomography for patients with sepsis in the Emergency Department

Senjun Jin, Zhongheng Zhang

The database is intended to support a wide array of research studies involving radiomics in sepsis patients, helping to reduce barriers to the reproducibility of clinical research.

sepsis

Published: Oct. 28, 2024. Version: 1.0.0

Model Credentialed Access

Shareable Artificial Intelligence to Extract Cancer Outcomes from Electronic Health Records for Precision Oncology Research

Kenneth Kehl, Pavel Trukhanov, Christopher Fong, Justin Jee, Karl Pichotta, Morgan Paul, Chelsea Nichols, Michele Waters, Nikolaus Schultz, Deborah Schrag

The DFCI-imaging-student and DFCI-medonc-student AI models for extracting cancer outcomes from imaging reports and medical oncologist notes from electronic health records.

Published: Oct. 24, 2024. Version: 1.0.0

Database Credentialed Access

C-REACT: Contextualized Race and Ethnicity Annotations for Clinical Text

Oliver Bear Don't Walk IV, Adrienne Pichon, Harry Reyes Nieva, Tony Sun, Jaan Lı, Joshua Winston Joseph, Sivan Kinberg, Lauren R Richter, Salvatore Crusco, Kyle Kulas, Shaan Ahmed, Daniel Snyder, Ashkon Rahbari, Benjamin Ranard, Pallavi Juneja, Dina Demner-Fushman, Noemie Elhadad

Two sets of gold-standard annotations for race and ethnicity information from clinical notes in MIMIC-III. Contains race and ethnicity label assignments and related information such as country of origin and spoken language.

clinical notes patient country information race and ethnicity patient language information

Published: Oct. 21, 2024. Version: 1.0.0

Database Credentialed Access

MIMIC-IV

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, Brian Gow, Benjamin Moody, Steven Horng, Leo Anthony Celi, Roger Mark

Large database of de-identified health information from patients admitted to Beth Israel Deaconess Medical Center

critical care intensive care unit machine learning mimic

Published: Oct. 11, 2024. Version: 3.1