Resources

This study presents MIMIC-III-Ext-SBDH, a manually reviewed and consolidated annotation dataset of social and behavioral determinants of health (SBDH) derived from clinical notes in the MIMIC-III database. We previously developed SBDH-Reader, a larg…

Unstructured clinical documentation, such as progress notes, contains rich contextual information critical for clinical decision-making but remains underutilized in computational research due to the limited availability of annotated datasets. The MI…

This dataset contains TensorFlow SequenceExamples derived from patient records in MIMIC-III, a freely available set of deidentified medical records from critical care patients at Beth Israel Deaconess Medical Center. Each SequenceExample converts da…

This is a preprocessed dataset derived from patient records in MIMIC-III and eICU, two large-scale electronic health record (EHR) databases. It contains features and labels for 5 prediction tasks involving 3 adverse outcomes (prediction times listed…

Transformer-based neural language models have led to breakthroughs for a variety of natural language processing (NLP) tasks. However, most models are pretrained on general domain data. We propose a methodology to produce a model focused on the clini…

Medical decisions directly impact individuals’ health and well-being. Extracting decision spans from clinical notes plays a crucial role in understanding medical decision-making processes. The MedDec dataset includes expert-annotated decisions of te…

Immunosuppression due to underlying conditions or immunosuppressive medication use increases the risk of morbidity and mortality in the context of infectious disease. Identifying patients with immunosuppression is important for better studying and u…

The National Institutes of Health Stroke Scale (NIHSS) is a 15-item neurologic examination stroke scale. It quantifies the physical manifestations of neurological deficits and provides crucial support for clinical decision making and early-stage eme…

This dataset is a curated subset of MIMIC-III (v1.4), specifically formatted to facilitate reproducibility of the experiments in the work t-PatchGNN. It serves as part of a benchmark designed for forecasting irregular multivariate clinical time seri…

The EchoNotes Structured Database derived from MIMIC-III (ECHO-NOTE2NUM) is a structured echocardiogram database derived from 43,472 observational notes obtained during echocardiogram studies conducted in the intensive care unit at the Beth Israel D…