Resources


Database Credentialed Access

EHRXQA: A Multi-Modal Question Answering Dataset for Electronic Health Records with Chest X-ray Images

Seongsu Bae, Daeun Kyung, Jaehee Ryu, et al.

We present EHRXQA, the first multi-modal EHR QA dataset combining structured patient records with aligned chest X-ray images. EHRXQA contains a comprehensive set of QA pairs covering image-related, table-related, and image+table-related questions.

question answering machine learning electronic health records evaluation chest x-ray multi-modal question answering ehr question answering semantic parsing deep learning benchmark visual question answering

Published: July 23, 2024. Version: 1.0.0

Database Credentialed Access

MIMIC-Ext-MIMIC-CXR-VQA: A Complex, Diverse, And Large-Scale Visual Question Answering Dataset for Chest X-ray Images

Seongsu Bae, Daeun Kyung, Jaehee Ryu, et al.

We introduce MIMIC-Ext-MIMIC-CXR-VQA, a complex, diverse, and large-scale dataset designed for Visual Question Answering (VQA) tasks within the medical domain, focusing primarily on chest radiographs.

question answering machine learning electronic health records evaluation chest x-ray radiology deep learning benchmark multimodal visual question answering

Published: July 19, 2024. Version: 1.0.0

Database Restricted Access

CheXchoNet: A Chest Radiograph Dataset with Gold Standard Echocardiography Labels

Pierre Elias, Shreyas Bhave

Early detection of heart failure is vital for improving outcomes. The dataset contains 71,589 CXRs paired with gold standard labels from echocardiograms to enable the training of models to detect pathologies indicative of early stage heart failure.

chest x-rays heart failure early detection cardiac structural abnormalties deep learning

Published: March 20, 2024. Version: 1.0.0

Database Credentialed Access

MIMIC-CXR-JPG - chest radiographs with structured labels

Alistair Johnson, Matthew Lungren, Yifan Peng, et al.

Chest x-rays in JPG format with structured labels derived from the associated radiology report.

computer vision chest x-ray radiology deep learning mimic

Published: March 12, 2024. Version: 2.1.0

Database Credentialed Access

Nosocomial Risk Datasets from MIMIC-III

Travis Goodwin

Text-based Longitudinal Data for Predicting Nosocomial Disease Risk as used by CANTRIP.

pressure injury risk prediction acute kidney injury anemia forecasting natural language processing deep learning

Published: Sept. 15, 2022. Version: 1.0

Database Open Access

Haaglanden Medisch Centrum sleep staging database

Diego Alvarez-Estevez, Roselyne Rijsman

A collection of 151 whole-night PolySomnoGraphic (PSG) sleep recordings from the Haaglanden Medisch Centrum (HMC, The Netherlands) sleep center containing different traces of ExG activity and expert's scorings of sleep stages

edf inter-database generalization sleep staging psg deep learning

Published: March 18, 2022. Version: 1.1

Visualize waveforms

Database Open Access

A multi-camera and multimodal dataset for posture and gait analysis

Manuel Palermo, João Mendes Lopes, João André, et al.

Multimodal dataset with 166k samples for vision-based applications with a smart walker used in gait and posture rehabilitation. It is equipped with a pair of Depth cameras with data synchronized with an inertial MoCap system worn by the participant.

computer vision inertial motion capture smart walker gait and posture analysis depth rehabilitation human pose estimation deep learning

Published: Nov. 1, 2021. Version: 1.0.0

Database Restricted Access

REFLACX: Reports and eye-tracking data for localization of abnormalities in chest x-rays

Ricardo Bigolin Lanfredi, Mingyuan Zhang, William Auffermann, et al.

This dataset contains 3032 cases of eye-tracking data collected while five radiologists dictated reports for frontal chest x-rays, synchronized timestamped dictation transcription, and manual labels for validation of localization of abnormalities.

eye tracking radiology report reflacx fixations chest x-rays computer vision gaze machine learning radiology deep learning

Published: Sept. 27, 2021. Version: 1.0.0

Database Credentialed Access

VinDr-CXR: An open dataset of chest X-rays with radiologist annotations

Ha Quy Nguyen, Hieu Huy Pham, le tuan linh, et al.

VinDr-CXR: An open dataset of chest X-rays with radiologist's annotations

lesion detection chest x-ray interpretation disease classification computer vision deep learning

Published: June 22, 2021. Version: 1.0.0

Database Credentialed Access

MIMIC-III - SequenceExamples for TensorFlow modeling

Jonas Kemp, Kun Zhang, Andrew Dai

MIMIC-III data converted into TensorFlow SequenceExample format, for use in modeling pipelines.

tensorflow sequence modeling machine learning deep learning

Published: Sept. 29, 2020. Version: 1.0.0