Resources
Database Credentialed Access
RadCoref: Fine-tuning coreference resolution for different styles of clinical narratives
RadCoref is a small subset of MIMIC-CXR with manually annotated coreference mentions and clusters. Based on the annotated data, we fine-tuned a deep neural model and used it to annotate the whole MIMIC-CXR dataset. Both data are available.
natural language processing coreference resolution radiology
Published: Jan. 30, 2024. Version: 1.0.0
Database Credentialed Access
PIFIR: PET-CT Invasive Fungal Infection Reports
A corpus of PET-CT reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.
nlp clinical documentation information extraction invasive fungal infections
Published: Feb. 27, 2025. Version: 1.0.0
Database Credentialed Access
CHIFIR: Cytology and Histopathology Invasive Fungal Infection Reports
A corpus of cytology and histopathology reports annotated for terminology relevant to fungal infections. Ideal for validation of named entity recognition and relation extraction methods.
nlp clinical documentation information extraction invasive fungal infections
Published: Feb. 20, 2024. Version: 1.0.2