Resources

22 results for "medical information extraction"

Database Credentialed Access

EHR-DS-QA: A Synthetic QA Dataset Derived from Medical Discharge Summaries for Enhanced Medical Information Retrieval Systems

Konstantin Kotschenreuther

This dataset was designed and created to enable advancements in healthcare-focused large language models, particularly in the context of retrieval-augmented clinical question-answering capabilities. Developed using a self-constructed pipeline based …
Published: Jan. 11, 2024. Version: 1.0.0
Database Credentialed Access

CORAL: expert-Curated medical Oncology Reports to Advance Language model inference

Madhumita Sushil, Vanessa Kennedy, Divneet Mandair, et al.

Both medical care and observational studies in oncology require a thorough understanding of a patient's disease progression and treatment history, often elaborately documented within clinical notes. As large language models (LLMs) are becoming more …
Published: Feb. 7, 2024. Version: 1.0
Database Credentialed Access

AIPatient KG: MIMIC-III and CORAL Electronic Health Records based Patient Knowledge Graph

Lizhou Fan, Huizi Yu

This study integrates the MIMIC-III and CORAL electronic health records into knowledge graphs to enhance their utility for advanced medical analysis and decision-making. MIMIC-III contains comprehensive data from over 40,000 patients, while CORAL fo…
Published: April 15, 2025. Version: 1.0.0
Database Restricted Access

MIMIC-Eye: Integrating MIMIC Datasets with REFLACX and Eye Gaze for Multimodal Deep Learning Applications

Chihcheng Hsieh, Chun Ouyang, Jacinto C Nascimento, et al.

Deep learning technologies have been widely adopted in medical imaging due to their ability to extract features from images and make accurate diagnoses automatically. Medical imaging technologies are particularly useful because they can be trained t…
Published: March 23, 2023. Version: 1.0.0
Challenge Credentialed Access

ShAReCLEF eHealth Evaluation Lab 2014 (Task 2): Disorder Attributes in Clinical Reports

Danielle Mowery

This project focuses on Task 2 of the 2014 ShARe/CLEF eHealth evaluation lab, which extended Task 1 of the 2013 ShARe/CLEF eHealth evaluation lab by focusing on identification and normalization of disorder attributes. The task comprises two subtasks…
Published: Nov. 1, 2013. Version: 1.0
Challenge Credentialed Access

ShAReCLEF eHealth 2013: Natural Language Processing and Information Retrieval for Clinical Care

Danielle Mowery

This is the pilot year of the ShARe/CLEF eHealth Evaluation Lab, a shared task focused on natural language processing (NLP) and information retrieval (IR) for clinical care. The task is co-organized by the Shared Annotated Resources (ShARe) project …
Published: Feb. 15, 2013. Version: 1.0
Database Credentialed Access

Immunosuppressive Condition and Medication Annotations for Admission Notes in the MIMIC-III Database

Vijeeth Guggilla, Melissa Bak, Mengjia Kang, et al.

Immunosuppression due to underlying conditions or immunosuppressive medication use increases the risk of morbidity and mortality in the context of infectious disease. Identifying patients with immunosuppression is important for better studying and u…
Published: Aug. 4, 2025. Version: 1.0.0
Database Credentialed Access

MIMIC-Ext-CXR-QBA: A Structured, Tagged, and Localized Visual Question Answering Dataset with Question-Box-Answer Triplets and Scene Graphs for Chest X-ray Images

Philip Müller, Friederike Jungmann, Georgios Kaissis, et al.

Visual Question Answering (VQA) enables flexible and context-dependent analysis of medical images, such as chest X-rays (CXRs), by allowing users to pose specific questions and receive nuanced answers. However, existing CXR VQA datasets are typicall…
Published: Aug. 25, 2026. Version: 1.0.1
Database Credentialed Access

RadGraph-XL: A Large-Scale Expert-Annotated Dataset for Entity and Relation Extraction from Radiology Reports

Jean-Benoit Delbrouck

Radiology reports are essential for clinical care but pose challenges for automated processing due to their unstructured nature. Existing datasets like RadGraph-1.0 focus narrowly on chest X-rays (CXR), limiting their applicability. We introduce Rad…
Published: Sept. 12, 2025. Version: 1.0.0
Database Credentialed Access

National Institutes of Health Stroke Scale (NIHSS) Annotations for the MIMIC-III Database

Jiayang Wang, Xiaoshuo Huang, Lin Yang, et al.

The National Institutes of Health Stroke Scale (NIHSS) is a 15-item neurologic examination stroke scale. It quantifies the physical manifestations of neurological deficits and provides crucial support for clinical decision making and early-stage eme…
Published: Jan. 25, 2021. Version: 1.0.0