Resources


Database Credentialed Access

MIMIC-Ext-MIMIC-CXR-VQA: A Complex, Diverse, And Large-Scale Visual Question Answering Dataset for Chest X-ray Images

Seongsu Bae, Daeun Kyung, Jaehee Ryu, Eunbyeol Cho, Gyubok Lee, Sunjun Kweon, Jungwoo Oh, Lei JI, Eric Chang, Tackeun Kim, Edward Choi

We introduce MIMIC-Ext-MIMIC-CXR-VQA, a complex, diverse, and large-scale dataset designed for Visual Question Answering (VQA) tasks within the medical domain, focusing primarily on chest radiographs.

question answering chest x-ray benchmark evaluation radiology electronic health records machine learning multimodal deep learning visual question answering

Published: July 19, 2024. Version: 1.0.0

Database Credentialed Access

RaDialog Instruct Dataset

Chantal Pellegrini, Ege Özsoy, Benjamin Busam, Nassir Navab, Matthias Keicher

Image-based instruct data for Chest X-Ray understanding and analysis.

medical image understaning radiology chatbot radiology report generation radiology assistant large vision-language models

Published: July 12, 2024. Version: 1.1.0

Database Credentialed Access

EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries

Sunjun Kweon, Jiyoun Kim, Heeyoung Kwak, Dongchul Cha, Hangyul Yoon, Kwang Hyun Kim, Jeewon Yang, Seunghyun Won, Edward Choi

An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries

Published: June 26, 2024. Version: 1.0.1

Challenge Credentialed Access

Discharge Me: BioNLP ACL'24 Shared Task on Streamlining Discharge Documentation

Justin Xu

Data for the "Discharge Me!" Shared Task on Streamlining Discharge Documentation for BioNLP ACL'24

generation bionlp acl discharge summary

Published: April 12, 2024. Version: 1.3

Model Credentialed Access

Characterization of Stigmatizing Language in Medical Records

Keith Harrigian, Ayah Zirikly, Brant Chee, Alya Ahmad, Anne Links, Somnath Saha, Mary Catherine Beach, Mark Dredze

A suite of classifiers for detecting three types of stigmatizing language in electronic medical records. Trained on MIMIC-IV discharge notes.

clinical natural language processing domain transfer bias stigmatizing language large language models mimic

Published: Nov. 6, 2023. Version: 1.0.0

Challenge Open Access

Heart Murmur Detection from Phonocardiogram Recordings: The George B. Moody PhysioNet Challenge 2022

Matthew Reyna, Yashar Kiarashi, Andoni Elola, Jorge Oliveira, Francesco Renna, Annie Gu, Erick Andres Perez Alday, Nadi Sadr, Sandra Mattos, Miguel Coimbra, Reza Sameni, Ali Bahrami Rad, Zuzana Koscova, Gari Clifford

2022 Physionet Challenge is devoted to detecting the presence or absence of murmurs from multiple heart sound recordings from multiple auscultation locations, as well as detecting the clinical outcomes.

challenge competition cardiac auscultation congenital heart diseases

Published: Sept. 28, 2023. Version: 1.0.0

Database Credentialed Access

ReFiSco: Report Fix and Score Dataset for Radiology Report Generation

Katherine Tian, Sina J Hartung, Andrew A Li, Jaehwan Jeong, Fardad Behzadi, Juan Calle-Toro, Subathra Adithan, Michael Pohlen, David Osayande, Pranav Rajpurkar

Preliminary human expert evaluation study on 60 MIMIC-CXR radiology reports

Published: Aug. 23, 2023. Version: 0.0

Database Open Access

PTB-XL+, a comprehensive electrocardiographic feature dataset

Nils Strodthoff, Temesgen Mehari, Claudia Nagel, Philip Aston, Ashish Sundar, Claus Graff, Jørgen Kanters, Wilhelm Haverkamp, Olaf Doessel, Axel Loewe, Markus Bär, Tobias Schaeffter

ECG feature dataset accompanying the PTB-XL ECG dataset

ptb-xl ptb ecg electrocardiography

Published: June 27, 2023. Version: 1.0.1

Visualize waveforms

Database Open Access

CogWear: Can we detect cognitive effort with consumer-grade wearables?

Michal K Grzeszczyk, Rosmary Blanco, Paulina Adamczyk, Maciej Kus, Sylwia Marek, Ryszard Pręcikowski, Aneta Lisowska

Physiological data captured in experimental condition by three wearable devices.

Published: March 31, 2023. Version: 1.0.0

Database Credentialed Access

Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries

Melissa Poulsen, Vanessa Troiani, Philip Freda, Danielle Mowery, Anahita Davoudi

The database contains a corpus of annotated data from the MIMIC-III Critical Care Database from a study that aimed to develop and apply an annotation schema to characterize opioid use disorder and related contextual factors.

opioid use disorder substance use natural language processing clinical notes

Published: Feb. 8, 2023. Version: 1.0.0