Resources


Database Credentialed Access

Maternal fat ultrasound measurement and nutritional assessment during pregnancy: A dataset centered in gestational outcomes

Alexandre da Silva Rocha, Juliana Rombaldi Bernardi, Alice Schoffel, et al.

Dataset collected as part of a prospective study in which abdominal maternal fat tissue measurements were compared with outcomes during hospitalization for labor and delivery.

pregnancy ultrasound abdominal

Published: Dec. 4, 2020. Version: 1.0.0

Database Credentialed Access

AMR-UTI: Antimicrobial Resistance in Urinary Tract Infections

Michael Oberst, Soorajnath Boominathan, Helen Zhou, et al.

AMR-UTI is a freely accessible dataset, derived from electronic health record (EHR) information on over 100,000 urinary tract infections (UTI) treated at Massachusetts General Hospital and Brigham & Women's Hospital in Boston, MA, USA.

antibiotic resistance causal inference policy learning urinary tract infection antimicrobial resistance clinical decision support machine learning

Published: Nov. 4, 2020. Version: 1.0.0

Database Restricted Access

Gout Emergency Department Chief Complaint Corpora

John David Osborne, Tobias O'Leary, Amy Mudano, et al.

A corpus of chief complaints tagged with predicted gout flare status and chart reviewed gout flare status. Ideal for input to masked language model training to supplement lengthy clinical text notes.

gout emergency department nlp

Published: Oct. 19, 2020. Version: 1.0

Database Credentialed Access

MIMIC-III - SequenceExamples for TensorFlow modeling

Jonas Kemp, Kun Zhang, Andrew Dai

MIMIC-III data converted into TensorFlow SequenceExample format, for use in modeling pipelines.

tensorflow sequence modeling machine learning deep learning

Published: Sept. 29, 2020. Version: 1.0.0

Software Open Access

R-DECO: An open-source Matlab based graphical user interface for the detection and correction of R-peaks

Jonathan Moeyersons, Matthew Amoni, Sabine Van Huffel, et al.

An open-source Matlab based graphical user interface for the detection and correction of R-peaks.

algorithms and analysis of algorithms signal processiong visual analysis graphical user interface

Published: Sept. 8, 2020. Version: 1.0.0

Database Open Access

Visceral adipose tissue measurements during pregnancy

Alexandre da Silva Rocha, Lisia von Diemen, Daniela Kretzer, et al.

Maternal visceral adipose tissue measurements collected as part of a cohort study of 154 pregnant women.

Published: March 23, 2020. Version: 1.0.0

Database Open Access

Motion and heart rate from a wrist-worn wearable and labeled sleep from polysomnography

Olivia Walch

Motion data and heart rate measurements from Apple Watches from sleeping people undergoing polysomnography.

sleep polysomnography

Published: Oct. 8, 2019. Version: 1.0.0

Database Open Access

Preterm Infant Cardio-Respiratory Signals Database

ECG and respiration recordings of ten preterm infants collected from a Neonatal Intensive Care Unit.

infant neonate multiparameter respiration ecg

Published: Feb. 9, 2017. Version: 1.0.0

Visualize waveforms

Challenge Open Access

The First Five Challenges Revisited: The PhysioNet/Computing in Cardiology Challenge 2005

Our popular series of challenges presented in cooperation with Computers in Cardiology continues this year in a new mode. Participants are invited to choose one of the five previous challenges as a topic for a follow-up study:

  • Detecting sleep apn…

challenge

Published: May 2, 2005. Version: 1.0.0

Challenge Open Access

Spontaneous Termination of Atrial Fibrillation: The PhysioNet/Computing in Cardiology Challenge 2004

The fifth annual PhysioNet/Computers in Cardiology Challenge focusses on this question: Is it possible to predict if (or when) an episode of atrial fibrillation will end spontaneously?

challenge atrial fibrillation ecg

Published: Oct. 8, 2004. Version: 1.0.0