Resources
5 results for "entity normalization"
Database
Open Access
Synthetic Mention Corpora for Disease Entity Recognition and Normalization
Named Entity Recognition (NER) and Entity Normalization (EN) are fundamental tasks in information extraction, particularly in the biomedical and clinical domains. NER identifies textual mentions of entities, while EN maps these mentions to unique id…
Database
Credentialed Access
MIMIC-IV-Ext-EntityCoding: Clinical Named Entity Recognition and Assertion Classification Dataset for ICD Coding
This dataset provides clinical Named Entity Recognition (NER) and Assertion Classification (AC) annotations for 400 discharge summaries from MIMIC-IV-Note (v2.2), designed to support research on computer-assisted ICD coding and related clinical natu…
Database
Open Access
CUILESS2016
The Concept Unique Identifier (CUI)-less database contains a corpus of "CUI-less" concepts taken from the SemEval2015 Task 14 that have been assigned CUIs. The annotation process allows assignment of CUIS from any Unified Medical Language System (UM…
Database
Credentialed Access
MIMIC-CXR-Ext-MIMIC-CXR-DB: Linking MIMIC-IV Chest Radiographs with Rich and Harmonized Clinical Context
MIMIC-CXR-DB is a relational clinical database comprising 146,333 chest radiographs linked to hospital admissions, designed to support research at the intersection of electronic health records (EHRs) and chest radiography. The database integrates ho…
Database
Restricted Access
CXRGraph: Using Information Extraction to Normalize the Training Data for Automatic Radiology Report Generation
CXRGraph is a dataset of structured radiology reports dataset following the RadGraph format, which has been tailored for the Automatic Radiology Report Generation (ARRG) task. CXRGraph assorts clinical information from full-text radiology reports in…