2023 News


BioNLP Workshop 2023: Problem List Summarization

News from: BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization v1.0.0.

Jan. 19, 2023

We are excited to announce the launch of a shared task on problem list summarization at the BioNLP Workshop 2023. The goal for participants is to generate a list of diagnoses and problems in a patient’s daily care plan using input from the provider’s progress notes during hospitalization. The task contains 768 progress notes for training, and 300 progress notes for evaluation. The goal of this shared task is to attract future research efforts in building NLP models for real-world decision support applications, where a system generating relevant and accurate diagnoses will assist the healthcare providers’ decision-making process and improve the quality of care for patients.

Participants will be tasked with developing NLP systems for EHR summarization. Participants who design novel systems and achieve competitive performance in the shared task, running from January to April 2023, will be invited to present their results at the BioNLP Workshop, which will be held in Toronto, Canada and co-located with ACL 2023. The challenge is open to anyone interested in clinical NLP and medical AI. We encourage individuals, teams, and organizations to participate.

To register for the challenge, please visit: https://forms.gle/geTXN6Z1pyfC55Fn8. More information about the challenge, including the official rules and guidelines, can be found at: https://physionet.org/content/bionlp-workshop-2023-task-1a/. You are welcome to join our google discussion group for newest update: https://groups.google.com/g/bionlp2023problemsumm


SOAP Note Tagging and Problem List Summarization dataset: Files unavailable until July 13th, 2023

News from: Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization v1.0.0.

Jan. 19, 2023

The SOAP Note Tagging and Problem List Summarization dataset dataset is temporarily unavailable as it is part of an ongoing shared task of BioNLP Workshop 2023: 1A (Problem List Summarization). The dataset will be made available on July 13th, 2023. More details about the workshop and shared task can be found at: https://doi.org/10.13026/s8wk-ja78

We apologize for any inconvenience this may cause and appreciate your understanding. We will provide updates as soon as more information becomes available. A new test set with 300 progress notes will be released along with the original set of 768 notes when the embargo is lifted. If you are interested in signing up the shared task, register here: https://forms.gle/geTXN6Z1pyfC55Fn8