Resources


Database Credentialed Access

RaDialog Instruct Dataset

Chantal Pellegrini, Ege Özsoy, Benjamin Busam, Nassir Navab, Matthias Keicher

Image-based instruct data for Chest X-Ray understanding and analysis.

medical image understaning radiology chatbot radiology report generation radiology assistant large vision-language models

Published: July 12, 2024. Version: 1.1.0

Database Credentialed Access

MIMIC-IV-Ext Clinical Decision Making: A MIMIC-IV Derived Dataset for Evaluation of Large Language Models on the Task of Clinical Decision Making for Abdominal Pathologies

Paul Hager, Friederike Jungmann, Daniel Rueckert

A curated set of ED clinical decision making cases for four abdominal pathologies. Each case contains the exams required to diagnose including HPI, physical examination, laboratory tests, and imaging. Relevant treatment information is also included.

clinical decision making abdominal pathologies treatment plan emergency room diagnosis large language models

Published: July 8, 2024. Version: 1.1

Database Credentialed Access

mBRSET, a Mobile Brazilian Retinal Dataset

Luis Filipe Nakayama, Lucas Zago Ribeiro, David Restrepo, Nathan Santos Barboza, Raul Dias Fiterman, Maria luiza Vieira Sousa, Alexandre Durao Alves Pereira, Caio Regatieri, Fernando Korn Malerbi, Rafael Andrade

mBRSET - a Mobile Brazilian Retinal Dataset

ophthalmology retina

Published: June 26, 2024. Version: 1.0

Database Credentialed Access

EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries

Sunjun Kweon, Jiyoun Kim, Heeyoung Kwak, Dongchul Cha, Hangyul Yoon, Kwang Hyun Kim, Jeewon Yang, Seunghyun Won, Edward Choi

An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries

Published: June 26, 2024. Version: 1.0.1

Database Open Access

Radiology Report Generation Models Evaluation Dataset For Chest X-rays (RadEvalX)

Amos Rubin Calamida, Farhad Nooralahzadeh, Morteza Rohanian, Mizuho Nishio, Koji Fujimoto, Michael Krauthammer

The RadEvalX is a publicly available dataset developed similarly to the ReXVal dataset. RedEvalX focuses on radiologist evaluations of errors found in automatically generated radiology reports.

Published: June 18, 2024. Version: 1.0.0

Database Open Access

Gesture Recognition and Biometrics ElectroMyogram (GRABMyo)

Ning Jiang, Ashirbad Pradhan, Jiayuan He

Open-access dataset of electromyogram (EMG) recordings collected from the wrist and forearm muscles of 43 people while they performed hand gestures.

Published: June 7, 2024. Version: 1.1.0

Visualize waveforms

Model Credentialed Access

Me-LLaMA: Foundation Large Language Models for Medical Applications

Qianqian Xie, Qingyu Chen, Aokun Chen, Cheng Peng, Yan Hu, Fongci Lin, Xueqing Peng, Jimin Huang, Jeffrey Zhang, Vipina Keloth, Xinyu Zhou, Huan He, Lucila Ohno-Machado, Yonghui Wu, Hua Xu, Jiang Bian

Me-LLaMA is a family of large language models for medical applications trained using clinical text with LLaMA2 models as the base. We release model weights for the foundation models as well as the chat-enhanced models.

large language models

Published: June 5, 2024. Version: 1.0.0

Database Contributor Review

CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools

Eulalia Farre Maduell, Salvador Lima-Lopez, Santiago Andres Frid, Artur Conesa, Elisa Asensio, Antonio Lopez-Rueda, Helena Arino, Elena Calvo, Maria Jesús Bertran, Maria Angeles Marcos, Montserrat Nofre Maiz, Laura Tañá Velasco, Antonia Marti, Ricardo Farreres, Xavier Pastor, Xavier Borrat Frigola, Martin Krallinger

CARMEN-I is a Spanish corpus of 2,000 clinical records from Hospital Clínic, Barcelona. It covers COVID-19 patients and comorbidities, serving as a resource for training clinical NLP models and researchers in NLP applied to clinical documents.

de-identification clinical ner anonymization

Published: April 20, 2024. Version: 1.0.1

Challenge Credentialed Access

Discharge Me: BioNLP ACL'24 Shared Task on Streamlining Discharge Documentation

Justin Xu

Data for the "Discharge Me!" Shared Task on Streamlining Discharge Documentation for BioNLP ACL'24

generation bionlp acl discharge summary

Published: April 12, 2024. Version: 1.3

Database Open Access

PADS - Parkinsons Disease Smartwatch dataset

Julian Varghese, Alexander Brenner, Lucas Plagwitz, Catharina van Alen, Michael Fujarski, Tobias Warnecke

The PADS dataset contains smartwatch-based records from interactive neurological assessments of Parkinsons disease patients, differential diagnoses and healthy controls. The data is complemented with non-motor symptoms and medical history information

wearables movement disorders parkinsons disease

Published: March 25, 2024. Version: 1.0.0