Resources


Database Credentialed Access

CLIP: A Dataset for Extracting Action Items for Physicians from Hospital Discharge Notes

James Mullenbach, Yada Pruksachatkun, Sean Adler, Jennifer Seale, Jordan Swartz, T Greg McKelvey, Yi Yang, David Sontag

Clinical action items annotated over MIMIC-III. 718 discharge summaries are labeled at a sentence- and character-level with multiple action labels including Appointment, Lab, Procedure, Medication, Imaging, Patient Instructions, and Other.

Published: June 21, 2021. Version: 1.0.0

Database Open Access

St. Vincent's University Hospital / University College Dublin Sleep Apnea Database

Overnight polysomnograms with simultaneous three-channel Holter ECG, from 25 adult subjects with suspected sleep-disordered breathing.

polysomnogram sleep holter multiparameter ecg

Published: Oct. 9, 2007. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

Establishment of a Chinese critical care database from electronic healthcare records in a tertiary care medical center

Senjun Jin, Lin Chen, Kun Chen, Zhongheng Zhang

Chinese critical care database from electronic healthcare records in a tertiary care medical center

china critical care database

Published: Jan. 19, 2023. Version: 1.0

Database Restricted Access

Community-Acquired Pneumonia, Endotypes and Phenotypes (NACef): Prospective, observational cohort study of Translational Medicine

Natalia Sanabria-Herrera, Esteban Garcia Gallo, Luis Felipe Reyes

Community-Acquired Pneumonia (CAP) poses a significant health risk, linked to high in-hospital morbidity and mortality rates. The dataset includes clinical details of 768 CAP patients at Clinica Universidad de La Sabana, Colombia.

Published: Aug. 21, 2025. Version: 2.0.1

Database Restricted Access

ALarms, Outcomes Telemetry with Timing (ALOTT): a Bedside-EMR Database

John Lawrence, Mike Rayo, Timothy Huerta

Carescape is a deidentified 9 month period of high resolution telemetry data linked to Electronic Medical Records.

Published: March 19, 2025. Version: 1.0.0

Database Credentialed Access

INSPIRE, a publicly available research dataset for perioperative medicine

Leerang Lim, Hyung-Chul Lee

A public dataset that contains information related to surgery, anesthesia, laboratory results, medications, diagnosis, and outcomes from 50% of the patients who received surgery at Seoul National University Hospital between 2011 and 2020.

surgery open dataset multi-center perioperative medicine

Published: Aug. 12, 2024. Version: 1.3

Challenge Credentialed Access

BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization

Yanjun Gao, Dmitriy Dligach, Timothy Miller, Majid Afshar

This is the data storage for BioNLP Workshop Shared Task 1A: Problem List Summarization.

bionlp clinical natural language processing electronic health record summarization

Published: Nov. 12, 2023. Version: 2.0.0

Database Open Access

A large scale 12-lead electrocardiogram database for arrhythmia study

Jianwei Zheng, Hangyuan Guo, Huimin Chu

A 12-lead electrocardiogram database for arrhythmia research covering more than 10,000 patients

Published: Aug. 24, 2022. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

GOSSIS-1-eICU, the eICU-CRD subset of the Global Open Source Severity of Illness Score (GOSSIS-1) dataset

Jesse Raffa, Alistair Johnson, Tom Pollard, Omar Badawi

GOSSIS-1 is an in-hospital mortality prediction algorithm for critical care patients. GOSSIS-1 was trained using data from three countries. This dataset corresponds with the USA subset of the GOSSIS-1 dataset for the 2022 publication below.

icu critical care severity of illness global gossis apache mortality prediction benchmarking

Published: July 20, 2022. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-ECG-Ext-ICD: Diagnostic labels for MIMIC-IV-ECG

Nils Strodthoff, Juan Miguel Lopez Alcaraz, Wilhelm Haverkamp

Dataset that links ECG records from MIMIC-IV-ECG to ED discharge and hospital discharge diagnoses, which enables to train general ECG prediction models based on clinical labels and facilitates the retrieval of further clinical metadata from MIMIC-IV.

machine learning electrocardiography mimic

Published: Aug. 30, 2024. Version: 1.0.1