Resources


Database Credentialed Access

Establishment of a Chinese critical care database from electronic healthcare records in a tertiary care medical center

Senjun Jin, Lin Chen, Kun Chen, Zhongheng Zhang

Chinese critical care database from electronic healthcare records in a tertiary care medical center

china critical care database

Published: Jan. 19, 2023. Version: 1.0

Database Restricted Access

Community-Acquired Pneumonia, Endotypes and Phenotypes (NACef): Prospective, observational cohort study of Translational Medicine

Natalia Sanabria-Herrera, Esteban Garcia Gallo, Luis Felipe Reyes

Community-Acquired Pneumonia (CAP) poses a significant health risk, linked to high in-hospital morbidity and mortality rates. The dataset includes clinical details of 768 CAP patients at Clinica Universidad de La Sabana, Colombia.

Published: Aug. 21, 2025. Version: 2.0.1

Database Restricted Access

ALarms, Outcomes Telemetry with Timing (ALOTT): a Bedside-EMR Database

John Lawrence, Mike Rayo, Timothy Huerta

Carescape is a deidentified 9 month period of high resolution telemetry data linked to Electronic Medical Records.

Published: March 19, 2025. Version: 1.0.0

Database Credentialed Access

INSPIRE, a publicly available research dataset for perioperative medicine

Leerang Lim, Hyung-Chul Lee

A public dataset that contains information related to surgery, anesthesia, laboratory results, medications, diagnosis, and outcomes from 50% of the patients who received surgery at Seoul National University Hospital between 2011 and 2020.

surgery open dataset multi-center perioperative medicine

Published: Aug. 12, 2024. Version: 1.3

Challenge Credentialed Access

BioNLP Workshop 2023 Shared Task 1A: Problem List Summarization

Yanjun Gao, Dmitriy Dligach, Timothy Miller, Majid Afshar

This is the data storage for BioNLP Workshop Shared Task 1A: Problem List Summarization.

bionlp clinical natural language processing electronic health record summarization

Published: Nov. 12, 2023. Version: 2.0.0

Database Open Access

A large scale 12-lead electrocardiogram database for arrhythmia study

Jianwei Zheng, Hangyuan Guo, Huimin Chu

A 12-lead electrocardiogram database for arrhythmia research covering more than 10,000 patients

Published: Aug. 24, 2022. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

GOSSIS-1-eICU, the eICU-CRD subset of the Global Open Source Severity of Illness Score (GOSSIS-1) dataset

Jesse Raffa, Alistair Johnson, Tom Pollard, Omar Badawi

GOSSIS-1 is an in-hospital mortality prediction algorithm for critical care patients. GOSSIS-1 was trained using data from three countries. This dataset corresponds with the USA subset of the GOSSIS-1 dataset for the 2022 publication below.

icu critical care severity of illness global gossis apache mortality prediction benchmarking

Published: July 20, 2022. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-ECG-Ext-ICD: Diagnostic labels for MIMIC-IV-ECG

Nils Strodthoff, Juan Miguel Lopez Alcaraz, Wilhelm Haverkamp

Dataset that links ECG records from MIMIC-IV-ECG to ED discharge and hospital discharge diagnoses, which enables to train general ECG prediction models based on clinical labels and facilitates the retrieval of further clinical metadata from MIMIC-IV.

electrocardiography machine learning mimic

Published: Aug. 30, 2024. Version: 1.0.1

Database Contributor Review

CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools

Eulalia Farre Maduell, Salvador Lima-Lopez, Santiago Andres Frid, Artur Conesa, Elisa Asensio, Antonio Lopez-Rueda, Helena Arino, Elena Calvo, Maria Jesús Bertran, Maria Angeles Marcos, Montserrat Nofre Maiz, Laura Tañá Velasco, Antonia Marti, Ricardo Farreres, Xavier Pastor, Xavier Borrat Frigola, Martin Krallinger

CARMEN-I is a Spanish corpus of 2,000 clinical records from Hospital Clínic, Barcelona. It covers COVID-19 patients and comorbidities, serving as a resource for training clinical NLP models and researchers in NLP applied to clinical documents.

de-identification clinical ner anonymization

Published: April 20, 2024. Version: 1.0.1

Database Credentialed Access

Nosocomial Risk Datasets from MIMIC-III

Travis Goodwin

Text-based Longitudinal Data for Predicting Nosocomial Disease Risk as used by CANTRIP.

pressure injury risk prediction acute kidney injury anemia forecasting natural language processing deep learning

Published: Sept. 15, 2022. Version: 1.0