Resources

38 results for "clinical natural language processing"

Challenge Credentialed Access

ShAReCLEF eHealth 2013: Natural Language Processing and Information Retrieval for Clinical Care

Danielle Mowery

This is the pilot year of the ShARe/CLEF eHealth Evaluation Lab, a shared task focused on natural language processing (NLP) and information retrieval (IR) for clinical care. The task is co-organized by the Shared Annotated Resources (ShARe) project …
Published: Feb. 15, 2013. Version: 1.0
Model Credentialed Access

Clinical-T5: Large Language Models Built Using MIMIC Clinical Text

Eric Lehman, Alistair Johnson

Recent advances in scaling large language models (LLMs) has resulted in significant improvements over a number of natural language processing benchmarks. There has been some work to pretrain these language models over clinical text. These works demo…
Published: Jan. 25, 2023. Version: 1.0.0
Database Credentialed Access

MIMIC-IV-Note: Deidentified free-text clinical notes

Alistair Johnson, Tom Pollard, Steven Horng, et al.

The advent of large, open access text databases has driven advances in state-of-the-art model performance in natural language processing (NLP). The relatively limited amount of clinical data available for NLP has been cited as a significant barrier …
Published: Jan. 6, 2023. Version: 2.2
Database Credentialed Access

RadGraph-XL: A Large-Scale Expert-Annotated Dataset for Entity and Relation Extraction from Radiology Reports

Jean-Benoit Delbrouck

Radiology reports are essential for clinical care but pose challenges for automated processing due to their unstructured nature. Existing datasets like RadGraph-1.0 focus narrowly on chest X-rays (CXR), limiting their applicability. We introduce Rad…
Published: Sept. 12, 2025. Version: 1.0.0
Challenge Credentialed Access

ShAReCLEF eHealth Evaluation Lab 2014 (Task 2): Disorder Attributes in Clinical Reports

Danielle Mowery

This project focuses on Task 2 of the 2014 ShARe/CLEF eHealth evaluation lab, which extended Task 1 of the 2013 ShARe/CLEF eHealth evaluation lab by focusing on identification and normalization of disorder attributes. The task comprises two subtasks…
Published: Nov. 1, 2013. Version: 1.0
Challenge Credentialed Access

Analysis of Clinical Text: Task 14 of SemEval 2015

Guergana Savova

SemEval (Semantic Evaluation) is an ongoing series of evaluations of computational semantic analysis systems, organized under the umbrella of SIGLEX, the Special Interest Group on the Lexicon of the Association for Computational Linguistics. This pr…
Published: Dec. 28, 2014. Version: 2.0
Database Credentialed Access

MIMIC-III-Ext-Notes

Darren Liu, Monique Bouvier, Delgersuren Bold, et al.

Unstructured clinical documentation, such as progress notes, contains rich contextual information critical for clinical decision-making but remains underutilized in computational research due to the limited availability of annotated datasets. The MI…
Published: Feb. 27, 2026. Version: 1.0.0
Database Credentialed Access

MIMIC-IV-Ext Gender-Expansive Patient Stigmatizing Language Annotations

Liyang Xue, Mary Chayko, Vivek Singh

This database supports research on stigmatizing language in clinical documentation concerning gender-expansive patients. It contains expert-reviewed, note-level annotations for 754 deidentified discharge summaries from MIMIC-IV-Note, including 366 n…
Published: Oct. 19, 2026. Version: 1.0.0
Database Credentialed Access

Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries

Melissa Poulsen, Vanessa Troiani, Philip Freda, et al.

Opioid use disorder (OUD) is underdiagnosed in health system settings, limiting research on OUD using electronic health records (EHRs). Medical encounter notes can enrich structured EHR data with documented signs and symptoms of OUD and social risks…
Published: Feb. 8, 2023. Version: 1.0.0
Database Restricted Access

Swiss-Mammo: A physician-written, synthetic dataset of German mammography reports

Daniel Reichenpfader, Sandro von Däniken, Harald Marcel Bonel

This dataset, Swiss-Mammo, contains 28 manually constructed German mammography reports, each paired with an English translation. The reports are stratified across BI-RADS categories 0 through 6, with four reports per category. All reports were manua…
Published: June 24, 2025. Version: 1.0.1