Resources

30 results for "open-source"

Database Restricted Access

MIMIC-III-Ext-Synthetic-Clinical-Trial-Questions

Elizabeth Woo, Michael Craig Burkhart, Emily Alsentzer, et al.

Large-language models (LLMs) show promise for extracting information from clinical notes. Deploying these models at scale can be challenging due to high computational costs, regulatory constraints, and privacy concerns. To address these challenges, …
Published: April 22, 2025. Version: 1.0.0
Database Open Access

SHDB-AF: a Japanese Holter ECG database of atrial fibrillation

Kenta Tsutsui, Shany Biton Brimer, Joachim Behar

Saitama Heart Database Atrial Fibrillation (SHDB-AF) is a novel open-sourced Holter ECG database from Japan, containing data from 122 unique subjects with paroxysmal atrial fibrillation. Among the 128 recordings, 98 contain raw ECG data with rhythm …
Published: April 16, 2025. Version: 1.0.1
Database Restricted Access

Application of Med-PaLM 2 in the refinement of MIMIC-CXR labels

Kendall Park, Rory Sayres, Andrew Sellergren, et al.

MIMIC-CXR is a large, open source dataset that is widely-used in medical AI research. One of the limitations of this dataset is the lack of ground truth labels for the chest X-ray studies. Prior work has extracted structured labels from the MIMIC-CX…
Published: Feb. 4, 2025. Version: 1.0.0
Database Credentialed Access

Northwestern ICU (NWICU) database

Dana Moukheiber, William Temps, Bhadrappa Molgi, et al.

Retrospective medical data collection is essential for advancing patient care, offering insights and supporting the development of health technology. The Medical Information Mart for Intensive Care (MIMIC)-III database has been instrumental in provi…
Published: Nov. 19, 2024. Version: 0.1.0
Model Credentialed Access

Asclepius-R : Clinical Large Language Model Built On MIMIC-III Discharge Summaries

Sunjun Kweon, Junu Kim, Jiyoun Kim, et al.

The development of large language models tailored for handling patients’ clinical notes is often hindered by the limited accessibility and usability of these notes due to strict privacy regulations. To address these challenges, we first create synth…
Published: March 25, 2024. Version: 1.1.0
Database Open Access

Patient-level dataset to study the effect of COVID-19 in people with Multiple Sclerosis

Hamza Khan, Lotte Geys, peer baneke, et al.

Multiple Sclerosis (MS) is an inflammatory autoimmune disease of the central nervous system, causing increased vulnerability to infections and disability among young adults. Ever since the coronavirus disease 2019 (COVID-19) outbreak, caused by seve…
Published: Jan. 2, 2024. Version: 1.0.1
Database Open Access

PTB-XL+, a comprehensive electrocardiographic feature dataset

Nils Strodthoff, Temesgen Mehari, Claudia Nagel, et al.

The PTB-XL+ dataset is a comprehensive feature dataset that supplements the PTB-XL ECG dataset. It includes ECG features extracted via two commercial and one open-source algorithm in a harmonized format as well as median beats or, where applicable, …
Published: June 27, 2023. Version: 1.0.1 | Visualize waveforms
Database Credentialed Access

MIMIC-III and eICU-CRD: Feature Representation by FIDDLE Preprocessing

Shengpu Tang, Parmida Davarmanesh, Yanmeng Song, et al.

This is a preprocessed dataset derived from patient records in MIMIC-III and eICU, two large-scale electronic health record (EHR) databases. It contains features and labels for 5 prediction tasks involving 3 adverse outcomes (prediction times listed…
Published: April 28, 2021. Version: 1.0.0
Software Open Access

Waveform Database Software Package (WFDB) for MATLAB and Octave

Ikaro Silva, Benjamin Moody, George Moody

Physiological waveforms - such as electrocardiograms (ECG), electroencephalograms (EEG), electromyograms (EMG) - are generated during the course of routine care. These signals contain information that can be used to understand underlying conditions …
Published: April 5, 2021. Version: 0.10.0
Challenge Restricted Access

WiDS (Women in Data Science) Datathon 2020: ICU Mortality Prediction

Meredith Lee, Jesse Raffa, Marzyeh Ghassemi, et al.

WiDS (Women in Data Science) Datathon 2020: ICU Mortality Prediction focuses on patient health through data from MIT’s GOSSIS (Global Open Source Severity of Illness Score) initiative. Brought to you by the Global WiDS team, the West Big Data Innova…
Published: Jan. 22, 2020. Version: 1.0.0