Resources
Model Credentialed Access
Clinical-T5: Large Language Models Built Using MIMIC Clinical Text
Eric Lehman, Alistair Johnson
Published: Jan. 25, 2023. Version: 1.0.0
Database Credentialed Access
Annotation dataset of social determinants of health from MIMIC-III Clinical Care Database
Marco Guevara, Shan Chen, Spencer Thomas, Danielle Bitterman
natural language processing social determinants of health
Published: Nov. 24, 2023. Version: 1.0.0
Model Credentialed Access
Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes
Eric Lehman, Sarthak Jain, Karl Pichotta, Yoav Goldberg, Byron Wallace
Published: April 28, 2021. Version: 1.0.0
Database Credentialed Access
MS-CXR: Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing
Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez Valle, Hoifung Poon, Ozan Oktay
chest x-ray vision-language processing
Published: May 16, 2022. Version: 0.1
Database Credentialed Access
CXR-PRO: MIMIC-CXR with Prior References Omitted
Vignav Ramesh, Nathan Chi, Pranav Rajpurkar
generation free-text radiology reports references to priors retrieval large language models
Published: Nov. 23, 2022. Version: 1.0.0
Model Credentialed Access
Characterization of Stigmatizing Language in Medical Records
Keith Harrigian, Ayah Zirikly, Brant Chee, Alya Ahmad, Anne Links, Somnath Saha, Mary Catherine Beach, Mark Dredze
mimic clinical natural language processing large language models domain transfer bias stigmatizing language
Published: Nov. 6, 2023. Version: 1.0.0
Database Credentialed Access
MS-CXR: Making the Most of Text Semantics to Improve Biomedical Vision-Language Processing
Benedikt Boecking, Naoto Usuyama, Shruthi Bannur, Daniel Coelho de Castro, Anton Schwaighofer, Stephanie Hyland, Maria Teodora Wetscherek, Tristan Naumann, Aditya Nori, Javier Alvarez Valle, Hoifung Poon, Ozan Oktay
chest x-ray vision-language processing
Published: May 16, 2022. Version: 0.1
Database Credentialed Access
MIMIC-IV-Note: Deidentified free-text clinical notes
Alistair Johnson, Tom Pollard, Steven Horng, Leo Anthony Celi, Roger Mark
mimic deidentification critical care electronic health record clinical notes natural language processing
Published: Jan. 6, 2023. Version: 2.2
Database Credentialed Access
Chest ImaGenome Dataset
Joy Wu, Nkechinyere Agu, Ismini Lourentzou, Arjun Sharma, Joseph Paguio, Jasper Seth Yao, Edward Christopher Dee, William Mitchell, Satyananda Kashyap, Andrea Giovannini, Leo Anthony Celi, Tanveer Syeda-Mahmood, Mehdi Moradi
multimodal chest x-ray radiology machine learning scene graph visual dialogue object detection semantic reasoning bounding box relation extraction knowledge graph explainability reasoning chest cxr visual question answering deep learning disease progression
Published: July 13, 2021. Version: 1.0.0
Database Credentialed Access
BRAX, a Brazilian labeled chest X-ray dataset
Eduardo Pontes Reis, Joselisa Paiva, Maria Carolina Bueno da Silva, Guilherme Alberto Sousa Ribeiro, Victor Fornasiero Paiva, Lucas Bulgarelli, Henrique Lee, Paulo Victor dos Santos, vanessa brito, Lucas Amaral, Gabriel Beraldo, Jorge Nebhan Haidar Filho, Gustavo Teles, Gilberto Szarf, Tom Pollard, Alistair Johnson, Leo Anthony Celi, Edson Amaro
chest x-ray artificial intelligence dataset
Published: June 17, 2022. Version: 1.1.0