Resources
33 results for "systems modeling"
Software
Open Access
Gradient Algorithm
In finding an optimal stimulus waveform for inducing switches in neuronal states, analytical techniques from optimal control theory are often found to be difficult to use or extremely time intensive. Here, we present the code for a gradient-based al…
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EHR-DS-QA: A Synthetic QA Dataset Derived from Medical Discharge Summaries for Enhanced Medical Information Retrieval Systems
This dataset was designed and created to enable advancements in healthcare-focused large language models, particularly in the context of retrieval-augmented clinical question-answering capabilities. Developed using a self-constructed pipeline based …
Database
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Swiss-Mammo: A physician-written, synthetic dataset of German mammography reports
This dataset, Swiss-Mammo, contains 28 manually constructed German mammography reports, each paired with an English translation. The reports are stratified across BI-RADS categories 0 through 6, with four reports per category. All reports were manua…
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Multimodal Physiological Indices During Surgery Under Anesthesia
Monitoring nociception, the flow of information associated with harmful stimuli through the nervous system even during unconsciousness, is critical for proper anesthesia care during surgery. Currently, this is done by tracking heart rate and blood p…
Database
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Predictors of Hospital Onset Infection: A Matched Retrospective Cohort Dataset
This repository contains a de-identified and curated patient-level dataset for modeling the impact of fine-grained environmental and patient-level factors on nosocomial acquisition of a wide range of drug-susceptible and drug-resistant pathogens. Th…
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Medical-CXR-VQA dataset: A Large-Scale LLM-Enhanced Medical Dataset for Visual Question Answering on Chest X-Ray Images
Medical Visual Question Answering (VQA) is an important task in medical multi-modal Large Language Models (LLMs), aiming to answer clinically relevant questions regarding input medical images. This technique has the potential to improve the efficien…
Database
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AIPatient KG: MIMIC-III and CORAL Electronic Health Records based Patient Knowledge Graph
This study integrates the MIMIC-III and CORAL electronic health records into knowledge graphs to enhance their utility for advanced medical analysis and decision-making. MIMIC-III contains comprehensive data from over 40,000 patients, while CORAL fo…
Database
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RadGraph2: Tracking Findings Over Time in Radiology Reports
RadGraph2 is a dataset of 800 chest radiology reports annotated using a fine-grained entity-relationship schema, which is an expanded version of the previously introduced RadGraph dataset. In contrast with the previous approaches and the original Ra…
Database
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MIMIC-IV-Ext-MDS-ED: Multimodal Decision Support in the Emergency Department - a Benchmark Dataset for Diagnoses and Deterioration Prediction in Emergency Medicine
Measurable progress in the development of medical decision support systems has been hindered by a lack of comprehensive datasets. Many available datasets focus on narrow prediction tasks and do not include a diverse range of data types, which limits…
Database
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VinDr-PCXR: An open, large-scale pediatric chest X-ray dataset for interpretation of common thoracic diseases
Computer-aided diagnosis systems in adult chest radiography (CXR) have recently achieved great success thanks to the availability of large-scale, annotated datasets and the advent of high-performance supervised learning algorithms. However, the deve…