Resources
10 results for "disease progression"
Database
Credentialed Access
MS-CXR-T: Learning to Exploit Temporal Structure for Biomedical Vision-Language Processing
MS-CXR-T is a multi-modal benchmark dataset for evaluating biomedical vision-language processing (VLP) models on two distinct temporal tasks in radiology: image classification and sentence similarity. The former comprises multi-image frontal chest X…
Database
Open Access
Heart and lung segmentations for MIMIC-CXR/MIMIC-CXR-JPG and Montgomery County TB databases
Segmenting the heart and lungs from chest X-ray images is essential for accurate disease diagnosis, enabling the calculation of image-derived digital biomarkers for cardiopulmonary health assessment. Furthermore, creation of annotated data sets can …
Database
Contributor Review
BIDMC Metabolomic Cohort of Adults with Biopsy-Proven MASLD
Metabolic dysfunction-associated steatotic liver disease (MASLD), including its progressive form metabolic dysfunction-associated steatohepatitis (MASH), is the leading cause of chronic liver disease. Accurate delineation of the metabolites and sign…
Database
Restricted Access
Microbiological, Immunological and Biochemical Characteristics of the Development of Ventilator Associated Pneumonia
The respiratory microbiome plays a critical role in metabolism, immune system maturation, and protection against pathogens. Traditionally, respiratory microbiology in pneumonia focused on identifying a specific pathogen, often disregarding normal or…
Database
Credentialed Access
Lunguage: A Benchmark for Structured and Sequential Chest X-ray Interpretation
Radiology reports convey detailed clinical observations and capture diagnostic reasoning that evolves over time. However, existing evaluation methods are limited to single-report settings and rely on coarse metrics that fail to capture fine-grained …
fine-grained structured reports
attribute-level clinical reasoning
medical text structuring
longitudinal clinical reasoning
chest x-ray report parsing
medical information structuring
benchmark dataset for radiology report
medical information extraction
structured radiology reports
temporal relation extraction
radiology report benchmarking
longitudinal clinical understanding
Database
Credentialed Access
CORAL: expert-Curated medical Oncology Reports to Advance Language model inference
Both medical care and observational studies in oncology require a thorough understanding of a patient's disease progression and treatment history, often elaborately documented within clinical notes. As large language models (LLMs) are becoming more …
Database
Open Access
Autonomic Aging: A dataset to quantify changes of cardiovascular autonomic function during healthy aging
Autonomic function regulating blood pressure and cardiac rhythm progressively declines with increasing age. Impaired cardiovascular control promotes a variety of age-related conditions such as dementia, or Alzheimer’s disease. This study aims to pro…
Database
Credentialed Access
MIMIC-III-Ext-Notes
Unstructured clinical documentation, such as progress notes, contains rich contextual information critical for clinical decision-making but remains underutilized in computational research due to the limited availability of annotated datasets. The MI…
Database
Credentialed Access
RadGraph2: Tracking Findings Over Time in Radiology Reports
RadGraph2 is a dataset of 800 chest radiology reports annotated using a fine-grained entity-relationship schema, which is an expanded version of the previously introduced RadGraph dataset. In contrast with the previous approaches and the original Ra…
Database
Credentialed Access
Chest ImaGenome Dataset
In recent years, with the release of multiple large datasets, automatic interpretation of chest X-ray (CXR) images with deep learning models have become feasible for specific abnormalities or for generating preliminary reports. However, despite repo…