Resources

500 resources

Database Credentialed Access

Generalized Image Embeddings for the MIMIC Chest X-Ray dataset

Andrew Sellergren, Atilla Kiraly, Tom Pollard, et al.

This database contains compact information-rich embeddings of the MIMIC-CXR Database v2.0.0 using the CXR Foundation API v1.0.
Published: Feb. 22, 2023. Version: 1.0
Database Open Access

In-Gauge and En-Gage: Understanding Occupants' Behaviour, Engagement, Emotion, and Comfort Indoors with Heterogeneous Sensors and Wearables

Nan Gao, Max Marschall, Jane Burry, et al.

The project aims to understand occupants’ behaviour, engagement, emotion, and comfort indoors with heterogeneous sensors and wearables.
electrodermal activity heart rate environmental sensing thermal comfort modelling occupant behaviour sensing emotion sensing human behavoural modelling smart building physiological signals
Published: Feb. 13, 2023. Version: 1.0.0
Database Credentialed Access

Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries

Melissa Poulsen, Vanessa Troiani, Philip Freda, et al.

The database contains a corpus of annotated data from the MIMIC-III Critical Care Database from a study that aimed to develop and apply an annotation schema to characterize opioid use disorder and related contextual factors.
opioid use disorder substance use natural language processing clinical notes
Published: Feb. 8, 2023. Version: 1.0.0
Database Credentialed Access

Chest X-ray Dataset with Lung Segmentation

Wimukthi Indeewara, Mahela Hennayake, Kasun Rathnayake, et al.

CXLSeg dataset: Chest X-ray with Lung Segmentation, a comparatively large dataset of segmented Chest X-ray radiographs based on the MIMIC-CXR dataset. This contains segmentation results of 243,324 frontal view images and corresponding masks.
segmentation medical reports u-net chest radiographs mimic-cxr chest x-ray
Published: Feb. 8, 2023. Version: 1.0.0
Database Open Access

MIMIC-IV-ED Demo

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, et al.

An openly available subset of the MIMIC-IV-ED database
emergency department mimic
Published: Feb. 8, 2023. Version: 2.2
Database Open Access

MIMIC-IV Clinical Database Demo

Alistair Johnson, Lucas Bulgarelli, Tom Pollard, et al.

An openly available subset of patients in the MIMIC-IV database.
critical care electronic health record mimic
Published: Jan. 31, 2023. Version: 2.2
Database Open Access

Pressure, flow, and dynamic thoraco-abdominal circumferences data for adults breathing under CPAP therapy

Ella Frances Sophia Guy, Jennifer Knopp, Theodore Lerios, et al.

Dataset of pressure, flow, and dynamic abdominal and chest circumference for healthy people breathing with CPAP. Data was collected with PEEP settings of 0 (ZEEP), 4, and 8cmH2O at normal/resting, panting/short and deep/long breath patterns/rates.
Published: Jan. 25, 2023. Version: 1.0.0
Model Credentialed Access

Clinical-T5: Large Language Models Built Using MIMIC Clinical Text

Eric Lehman, Alistair Johnson

We train a T5-Base and T5-Large from scratch on MIMIC-III and MIMIC-IV. Additionally, we further pretrain T5-Base and SciFive on notes from MIMIC. We release these model weights on PhysioNet.
Published: Jan. 25, 2023. Version: 1.0.0
Software Open Access

Waveform Database Software Package (WFDB) for Python

Chen Xie, Lucas McCullum, Alistair Johnson, et al.

Tools for working with waveforms in Python.
waveform wfdb python
Published: Jan. 24, 2023. Version: 4.1.0
Database Credentialed Access

Establishment of a Chinese critical care database from electronic healthcare records in a tertiary care medical center

Senjun Jin, Lin Chen, Kun Chen, et al.

Chinese critical care database from electronic healthcare records in a tertiary care medical center
china database critical care
Published: Jan. 19, 2023. Version: 1.0