Resources


Database Credentialed Access

EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries

Sunjun Kweon, Jiyoun Kim, Heeyoung Kwak, et al.

An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries

Published: June 26, 2024. Version: 1.0.1

Software Open Access

Transformer-DeID: Deidentification of free-text clinical notes with transformers

Callandra Moore, Lucas Bulgarelli, Tom Pollard, et al.

Fine tune transformer-based neural networks to deidentify clinical text data.

deidentification neural networks transformers

Published: Nov. 2, 2023. Version: 1.0.0

Model Credentialed Access

What's in a Note? Unpacking Predictive Value in Clinical Note Representations

Tristan Naumann, William Boag

Word vectors corresponding to the AMIA 2018 Informatics Summit paper of the same name.

Published: Jan. 7, 2018. Version: 0.1

Challenge Credentialed Access

Analysis of Clinical Text: Task 14 of SemEval 2015

Guergana Savova

This is the dataset for SemEval 2014 and 2015, Analysis of Clinical Text

semeval nlp

Published: Dec. 28, 2014. Version: 2.0

Database Contributor Review

Medical Information Mart for Intensive Care Brazil (MIMIC-BR): a Brazilian Dataset of Anonymized Hospital and ICU Clinical Data

Gabriela Steil, Adhara Brandão Lima Vanhoz, Mateus de Lima Freitas, et al.

Medical Information Mart for Intensive Care Brazil (MIMIC-BR) is a Brazilian dataset of hospital and ICU adult patients anonymized data. It includes 31,789 admissions to the Einstein Hospital Israelita during a period of 3 years in the last 10 years

critical care dataset artificial intelligence intensive care unit tertiary heatlhcare data anonymization inpatients machine learning

Published: May 21, 2026. Version: 1.0.0

Database Restricted Access

MIMIC-III-Ext-Synthetic-Clinical-Trial-Questions

Elizabeth Woo, Michael Craig Burkhart, Emily Alsentzer, et al.

In our recent study, we used Llama-3.1-70B-Instruct to generate synthetic training examples resembling clinical trial eligibility criteria. We manually reviewed 1000 of these examples and release them here.

large language models synthetic data distillation clinical trial eligibility

Published: April 22, 2025. Version: 1.0.0

Database Restricted Access

Electrocardiogram-Capable Smartwatches: Assessing Their Clinical Accuracy and Application

Joaquin Recas, Mauro Buelga Suárez, Sergio González-Cabeza, et al.

This database allows the study of the feasibility of using ECG-capable smartwatches as diagnostic tools, focusing on their compliance with clinical standards and their ability to measure critical ECG parameters beyond AF detection.

ischemia fitbit sense ambulatory samsung galaxy watch st-segment withings scanwatch smartwatch apple watch

Published: April 9, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext-CEKG: A Process-Oriented Dataset Derived from MIMIC-IV for Enhanced Clinical Insights

Milad Naeimaei Aali, Felix Mannhardt, Pieter Jelle Toussaint

The MIMIC-IV-Ext-CEKG dataset is crafted for object-centric process mining in healthcare, specifically to create clinical event knowledge graphs for patients with multimorbidity, as well as for data mining and machine learning tasks.

mimic process mining multi entity process mining object centric event log clinical event knowledge graph

Published: April 8, 2025. Version: 1.0.0

Database Credentialed Access

SCRIPT X2B8 Dataset: per-day clinical features to model successful next-day extubation

Sam Fenske, Alec Peltekian, Mengjia Kang, et al.

This dataset contains electronic health record (EHR) data from ICU patients receiving mechanical ventilation, aggregated on a daily basis, along with annotations of intubation, extubation, tracheostomy days, and cases of failed extubation. Data can b

Published: Jan. 28, 2025. Version: 1.0.0

Database Credentialed Access

Annotation dataset of social determinants of health from MIMIC-III Clinical Care Database

Marco Guevara, Shan Chen, Spencer Thomas, et al.

Annotation dataset of social determinants of health from MIMC-III Clinical Care Database notes.

natural language processing social determinants of health

Published: Jan. 24, 2024. Version: 1.0.1