Resources
70 results for "clinical annotation"
Database
Restricted Access
DREAMT: Dataset for Real-time sleep stage EstimAtion using Multisensor wearable Technology
Sleep is an intrinsic part of human life, and recent advancements in wearable technology and machine learning have promised continuous and non-invasive methods of tracking sleep health and patterns, providing an important facet to a more holistic un…
Database
Credentialed Access
MIMIC-IV-Ext Gender-Expansive Patient Stigmatizing Language Annotations
This database supports research on stigmatizing language in clinical documentation concerning gender-expansive patients. It contains expert-reviewed, note-level annotations for 754 deidentified discharge summaries from MIMIC-IV-Note, including 366 n…
Challenge
Credentialed Access
ShAReCLEF eHealth 2013: Natural Language Processing and Information Retrieval for Clinical Care
This is the pilot year of the ShARe/CLEF eHealth Evaluation Lab, a shared task focused on natural language processing (NLP) and information retrieval (IR) for clinical care. The task is co-organized by the Shared Annotated Resources (ShARe) project …
Database
Credentialed Access
EHRCon: Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records
Electronic Health Records (EHRs) are integral for storing comprehensive patient medical records, combining structured data (e.g., medications) with detailed clinical notes (e.g., physician notes). These elements are essential for straightforward dat…
Database
Open Access
Radiology Report Generation Models Evaluation Dataset For Chest X-rays (RadEvalX)
The Radiology Report Generation Models Evaluation Dataset For Chest X-rays (RadEvalX) is publicly available and developed similarly to the ReXVal dataset. Just like ReXVal, RadEvalX focuses on radiologist evaluations of errors found in automatically…
Database
Restricted Access
MIMIC-IV-Ext-DiReCT
Large language models (LLMs) have recently demonstrated remarkable capabilities across a broad spectrum of tasks and applications, including the medical field. Models like GPT-4 excel in medical question answering but encounter challenges in interpr…
Database
Credentialed Access
CAD-Chest: Comprehensive Annotation of Diseases based on MIMIC-CXR Radiology Report
Several extant chest X-ray (CXR) datasets predominantly comprise binary disease labels and exhibit a deficiency in providing comprehensive disease-related information. Crucial facets of disease management, including disease severity, diagnostic unce…
Database
Credentialed Access
MIMIC-III-Ext-SBDH: An annotated social and behavioral determinants of health dataset
This study presents MIMIC-III-Ext-SBDH, a manually reviewed and consolidated annotation dataset of social and behavioral determinants of health (SBDH) derived from clinical notes in the MIMIC-III database. We previously developed SBDH-Reader, a larg…
Challenge
Credentialed Access
ShAReCLEF eHealth Evaluation Lab 2014 (Task 2): Disorder Attributes in Clinical Reports
This project focuses on Task 2 of the 2014 ShARe/CLEF eHealth evaluation lab, which extended Task 1 of the 2013 ShARe/CLEF eHealth evaluation lab by focusing on identification and normalization of disorder attributes. The task comprises two subtasks…
Database
Credentialed Access
Lunguage: A Benchmark for Structured and Sequential Chest X-ray Interpretation
Radiology reports convey detailed clinical observations and capture diagnostic reasoning that evolves over time. However, existing evaluation methods are limited to single-report settings and rely on coarse metrics that fail to capture fine-grained …
fine-grained structured reports
attribute-level clinical reasoning
medical text structuring
longitudinal clinical reasoning
chest x-ray report parsing
medical information structuring
benchmark dataset for radiology report
medical information extraction
structured radiology reports
temporal relation extraction
radiology report benchmarking
longitudinal clinical understanding