Resources


Challenge Credentialed Access

SNOMED CT Entity Linking Challenge

Will Hardman, Mark Banks, Rory Davidson, et al.

272 discharge notes from the MIMIC-IV-Note dataset annotated with SNOMED CT concepts.

snomed entity linking clinical annotation

Published: Feb. 17, 2026. Version: 1.2.1

Database Credentialed Access

MIMIC-CXR-Ext-MIMIC-CXR-DB: Linking MIMIC-IV Chest Radiographs with Rich and Harmonized Clinical Context

Houcemeddine Turki, Lukman Ismaila, Ahmed Ben Salem, et al.

MIMIC-CXR-DB is a de-identified database linking EHR data with chest X-ray metadata and structured clinical findings. It supports multimodal research by integrating imaging, laboratory, diagnostic, and ontology-linked information.

mimic-iv chest x-ray imaging clinical findings multimodal research ehr integration ontology-based linking

Published: Oct. 1, 2026. Version: 1.0

Database Open Access

Synthetic Mention Corpora for Disease Entity Recognition and Normalization

Kuleen Sasse, John David Osborne

We present the Synthetic Mention Corpora for Disease Entity Recognition and Normalization, containing 128000 disease mentions from the UMLS disorder group, generated by an LLM. This corpus aims to improve these tasks in biomedical and clinical texts.

nlp entity normalization named entity recognition data augmentation machine learning

Published: Feb. 3, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext-CEKG: A Process-Oriented Dataset Derived from MIMIC-IV for Enhanced Clinical Insights

Milad Naeimaei Aali, Felix Mannhardt, Pieter Jelle Toussaint

The MIMIC-IV-Ext-CEKG dataset is crafted for object-centric process mining in healthcare, specifically to create clinical event knowledge graphs for patients with multimorbidity, as well as for data mining and machine learning tasks.

process mining multi entity process mining object centric event log clinical event knowledge graph mimic

Published: April 8, 2025. Version: 1.0.0