Resources


Database Credentialed Access

Antibiotic Resistance Microbiology Dataset Mass General Brigham (ARMD-MGB)

Ziming Wei, Sanjat Kanjilal

ARMD-MGB contains detailed microbiology and clinical metadata for >225,000 patients and >970,000 cultures collected over 10 years

medical informatics antimicrobial resistance electronic health records

Published: Dec. 5, 2025. Version: 1.0.0

Database Restricted Access

TN-Mammo: A Multi-view Mammography Dataset for Breast Density Classification

Binh Nguyen, Cat Le, Loc Vu, Quynh Nguyen, Ha-Hieu Pham, Phuong Anh Vu, Thuan Huynh, Cao Tien Dung, Nghiem Diep Tuong, Byung-Woo Hong

We release the first version of TN-Mammo (June 2024), a mammogram dataset of 676 cases with breast density labels, providing high-quality data to support machine learning and early breast cancer detection.

Published: Oct. 4, 2025. Version: 1.0.0

Database Credentialed Access

A Temporal Dataset for Respiratory Support in Critically Ill Patients

Mira Moukheiber, Lama Moukheiber, Dana Moukheiber, Sicheng Hao, Leo Anthony Celi, Hyung-Chul Lee

A benchmark dataset offering hourly records over a 90-day period for 50,920 ICU subjects, including dynamic pulmonary function data and a spectrum of covariates for respiratory intervention analyses.

oberservational data time-series

Published: April 15, 2025. Version: 1.1.0

Database Credentialed Access

MIMIC-IV-Ext-CEKG: A Process-Oriented Dataset Derived from MIMIC-IV for Enhanced Clinical Insights

Milad Naeimaei Aali, Felix Mannhardt, Pieter Jelle Toussaint

The MIMIC-IV-Ext-CEKG dataset is crafted for object-centric process mining in healthcare, specifically to create clinical event knowledge graphs for patients with multimorbidity, as well as for data mining and machine learning tasks.

mimic process mining multi entity process mining object centric event log clinical event knowledge graph

Published: April 8, 2025. Version: 1.0.0

Database Restricted Access

LATTE-CXR: Locally Aligned TexT and imagE, Explainable dataset for Chest X-Rays

Elham Ghelichkhan, Tolga Tasdizen

This dataset includes bounding box-statement pairs for chest X-ray images, derived from radiologists’ eye-tracking data (for explainability) and annotations, for local visual-language models.

eye-tracking chest x-ray dataset automatically generated dataset caption-guided object detection image captioning with region-level description grounded radiology report generation phrase grounding xai multi-modal learning local visual-language models localization

Published: Feb. 4, 2025. Version: 1.0.0

Database Open Access

Patient-level dataset to study the effect of COVID-19 in people with Multiple Sclerosis

Hamza Khan, Lotte Geys, peer baneke, Giancarlo Comi, Liesbet Peeters

This dataset is part of the Global Data Sharing Initiative. The data was acquired by people with MS and clinicians using a fast data entry tool. The dataset includes demographics, comorbidities and hospital stay and COVID-19 symptoms of PwMS.

Published: Jan. 2, 2024. Version: 1.0.1

Database Open Access

Integration of Electroencephalogram and Eye-Gaze Datasets for Performance Evaluation in Fundamentals of Laparoscopic Surgery (FLS) Tasks

Somayeh B Shafiei, Saeed Shadpour

Brain activity and eye gaze data were collected from a group of 25 participants who completed the FLS tasks using a trainer box (Pyxus®). Each participant performed the tasks five times, and their performance was evaluated by an expert rater.

Published: Aug. 23, 2023. Version: 1.0.0

Visualize waveforms

Database Restricted Access

MIMIC-Eye: Integrating MIMIC Datasets with REFLACX and Eye Gaze for Multimodal Deep Learning Applications

Chihcheng Hsieh, Chun Ouyang, Jacinto C Nascimento, Joao Pereira, Joaquim Jorge, Catarina Moreira

MIMIC-Eye: Integrating MIMIC Datasets with REFLACX and Eye Gaze for Multimodal Deep Learning Applications

Published: March 23, 2023. Version: 1.0.0

Database Credentialed Access

RadQA: A Question Answering Dataset to Improve Comprehension of Radiology Reports

Sarvesh Soni, Kirk Roberts

RadQA is an electronic health record question answering dataset containing clinical questions that can be answered using the Findings and Impressions sections of radiology reports

machine reading comprehension radiology reports question answering clinical notes electronic health records

Published: Dec. 9, 2022. Version: 1.0.0

Database Credentialed Access

Learning to Ask Like a Physician: a Discharge Summary Clinical Questions (DiSCQ) Dataset

Eric Lehman

Dataset of questions asked by medical experts about patients. Medical experts will read a discharge summary line-by-line and (1) ask any question that they may have and (2) record what in the text "triggered" them to ask their question.

question generation question answering machine learning

Published: July 28, 2022. Version: 1.0