Resources


Challenge Open Access

2018 IEEE BHI and BSN Data Challenge

Tom Pollard, Alistair Johnson, Jesse Raffa

A challenge to explore real clinical questions in critically ill patients using the MIMIC. A collaboration with the IEEE Conference on Biomedical and Health Informatics 2018 and the IEEE Conference on Body Sensor Networks.

mimic challenge weekend effect ieee

Published: Feb. 5, 2018. Version: 1.0


Database Open Access

eICU Collaborative Research Database Demo

Alistair Johnson, Tom Pollard, Omar Badawi, Jesse Raffa

An openly available subset of the eICU Collaborative Research Database.

critical care eicu open data medical informatics

Published: July 15, 2019. Version: 2.0


Software Open Access

Logistic Regression-HSMM-based Heart Sound Segmentation

David Springer

Heart sound segmentation code, based on a duration-dependent hidden Markov model, extended with the use of logistic regression for emission probability estimation and an enhanced Viterbi algorithm.

Published: July 29, 2019. Version: 1.0


Database Credentialed Access

MIMIC-CXR Database

Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng

Chest radiographs in JPG format with structured labels extracted from the free-text reports.

natural language processing mimic machine learning chest x-rays radiology computer vision

Published: Aug. 2, 2019. Version: 1.0.0


Database Credentialed Access

MIMIC-III Clinical Database

Alistair Johnson, Tom Pollard, Roger Mark

MIMIC-III is a large, freely-available database comprising deidentified health-related data associated with over forty thousand patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012.

The databa…

natural language processing critical care machine learning intensive care clinical

Published: Sept. 4, 2016. Version: 1.4


Database Open Access

MIMIC Database

The MIMIC Database includes data recorded from over 90 ICU patients. The data in each case include signals and periodic measurements obtained from a bedside monitor as well as clinical data obtained from the patient's medical record. The recordi…

mimic critical care health record ehr icu

Published: March 15, 2000. Version: 1.0.0

Visualize waveforms

Database Open Access

Term-Preterm EHG Database

The Electrohysterogram records (uterine EMG records) included in the Term-Preterm ElectroHysteroGram DataBase (TPEHG DB) were obtained from 1997 to 2005 at the University Medical Centre Ljubljana, Department of Obstetrics and Gynecology. The records…

obstetrics gestation neuroelectric electrohysterogram

Published: Aug. 21, 2012. Version: 1.0.1

Visualize waveforms

Database Open Access

MIMIC-III Clinical Database Demo

Alistair Johnson, Tom Pollard, Roger Mark

An open source demo of the MIMIC-III Clinical Database

mimic critical care electronic health records

Published: April 24, 2019. Version: 1.4


Database Credentialed Access

MedNLI for Shared Task at ACL BioNLP 2019

Chaitanya Shivade

MedNLI test set for Shared Task at BioNLP 2019

mimic natural language inference recognizing textual entailment

Published: April 17, 2019. Version: 1.0.0


Database Open Access

CUILESS2016

The Concept Unique Identifier (CUI)-less database contains a corpus of "CUI-less" concepts taken from the SemEval2015 Task 14 that have been assigned CUIs. The annotation process allows assignment of CUIS from any Unified Medical Language …

concept umls snomed

Published: Jan. 24, 2018. Version: 1.0.0