Resources
222 results for "clinical"
Database
Credentialed Access
ENCoDE, mEasuring skiN Color to correct pulse Oximetry DisparitiEs: skin tone and clinical data from a prospective trial on acute care patients.
The wide adoption of pulse oximeters has given clinicians an easy, non-invasive way to measure arterial oxygen saturation. However, evidence suggests that pulse oximeter measurements have a deeper discrepancy in patients of darker skin tones compare…
Database
Credentialed Access
Medication Extraction Labels for MIMIC-IV-Note Clinical Database
This dataset release provides medication extraction labels for a subset of 600 discharge summaries from the 2023 MIMIC-IV-Note dataset. These labels are consistent with the schema from the 2009 i2b2 Workshop on NLP Challenges dataset. We utilized a …
Database
Credentialed Access
MIMIC-III Clinical Database CareVue subset
MIMIC-III is a database of critically ill patients admitted to an intensive care unit (ICU) at the Beth Israel Deaconess Medical Center (BIDMC) in Boston, MA. MIMIC-III has seen broad use, and was updated with the release of MIMIC-IV. MIMIC-IV conta…
Software
Credentialed Access
Code for generating the HAIM multimodal dataset of MIMIC-IV clinical data and x-rays
A multimodal combination of the MIMIC-IV v1.0.0 and MIMIC Chest X-ray (MIMIC-CXR-JPG) v2.0.0 databases filtered to only include patients that have at least one chest X-ray performed with the goal of validating multi-modal predictive analytics in hea…
Database
Credentialed Access
RuMedNLI: A Russian Natural Language Inference Dataset For The Clinical Domain
There is a shortage of text medical resources for the Russian language. This is a substantial obstacle in state-of-the-art NLP deep learning models research and development. To mitigate this issue we translated the MedNLI data from English to Russia…
Model
Credentialed Access
Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes
This project contains the weights of 7 different BERT models trained over a surrogate re-identified set of MIMIC-III (v1.4) notes. Each model is suitable for direct compatibility with the HuggingFace framework; users can easily load and apply the mo…
Challenge
Open Access
Early Prediction of Sepsis from Clinical Data: The PhysioNet/Computing in Cardiology Challenge 2019
Sepsis is a life-threatening condition that occurs when the body's response to infection causes tissue damage, organ failure, or death (Singer et al., 2016). In the U.S., nearly 1.7 million people develop sepsis and 270,000 people die from sepsis ea…
Database
Credentialed Access
MIMIC-III-Ext-Notes
Unstructured clinical documentation, such as progress notes, contains rich contextual information critical for clinical decision-making but remains underutilized in computational research due to the limited availability of annotated datasets. The MI…
Database
Credentialed Access
Tasks 1 and 3 from Progress Note Understanding Suite of Tasks: SOAP Note Tagging and Problem List Summarization
Applying methods in natural language processing on electronic health records (EHR) data is a growing field. Existing corpus and annotation focus on modelling textual features and relation prediction [1] . However, there is a paucity of annotated cor…
Model
Credentialed Access
Fine-tuning foundational models to code diagnoses from veterinary health records
Veterinary medical records represent a large data resource for application to veterinary and One Health clinical research efforts. Use of the data is limited by interoperability challenges including inconsistent data formats and data siloing. Clinic…