Resources

Social determinants of health (SDoH) have an important impact on patient outcomes but are incompletely collected from the electronic health records (EHR). This study researched the ability of large language models to extract SDoH from free text in E…

Opioid use disorder (OUD) is underdiagnosed in health system settings, limiting research on OUD using electronic health records (EHRs). Medical encounter notes can enrich structured EHR data with documented signs and symptoms of OUD and social risks…

This repository releases the EchoGraph-annotated ECHO-NOTE2NUM dataset, containing 45,794 echocardiography reports with comprehensive entity and relation annotations. Each report from the ECHO-NOTE2NUM dataset has been automatically annotated using …

Immunosuppression due to underlying conditions or immunosuppressive medication use increases the risk of morbidity and mortality in the context of infectious disease. Identifying patients with immunosuppression is important for better studying and u…

This database provides manually reviewed P-wave annotations for twelve ECG recordings from the MIT-BIH Arrhythmia Database [1]. The recordings were selected to support evaluation of P-wave detection across a range of rhythms, including pathological …

This study presents MIMIC-III-Ext-SBDH, a manually reviewed and consolidated annotation dataset of social and behavioral determinants of health (SBDH) derived from clinical notes in the MIMIC-III database. We previously developed SBDH-Reader, a larg…

The Contextualized Race and Ethnicity Annotations for Clinical Text (C-REACT) dataset is a large publicly available corpus of sentences from clinical notes manually annotated for information related to race and ethnicity (RE). The corpus presented h…

To develop robust algorithms for automated diagnosis of medical conditions such as cardiac arrhythmias, researchers require large collections of data with human expert annotations. Currently, there is a lack of accessible, open-source platforms for …

Radiographs are used as the most critical imaging tool for identifying spine anomalies in clinical practice [1]. The evaluation of spinal bone lesions, however, is a challenging task for radiologists. To the best of our knowledge, no existing studie…

The National Institutes of Health Stroke Scale (NIHSS) is a 15-item neurologic examination stroke scale. It quantifies the physical manifestations of neurological deficits and provides crucial support for clinical decision making and early-stage eme…