Resources
Database Credentialed Access
Annotation dataset of social determinants of health from MIMIC-III Clinical Care Database
Marco Guevara, Shan Chen, Spencer Thomas, Danielle Bitterman
natural language processing social determinants of health
Published: Jan. 24, 2024. Version: 1.0.1
Database Credentialed Access
Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries
Melissa Poulsen, Vanessa Troiani, Philip Freda, Danielle Mowery, Anahita Davoudi
opioid use disorder substance use clinical notes natural language processing
Published: Feb. 8, 2023. Version: 1.0.0
Software Open Access
PhysioTag: An Open-Source Platform for Collaborative Annotation of Physiological Waveforms
Lucas McCullum, Benjamin Moody, Hasan Saeed, Tom Pollard, Xavier Borrat Frigola, Li-wei Lehman, Roger Mark
Published: April 25, 2023. Version: 1.0.0
Database Credentialed Access
C-REACT: Contextualized Race and Ethnicity Annotations for Clinical Text
Oliver Bear Don't Walk IV, Adrienne Pichon, Harry Reyes Nieva, Tony Sun, Jaan Lı, Joshua Winston Joseph, Sivan Kinberg, Lauren R Richter, Salvatore Crusco, Kyle Kulas, Shaan Ahmed, Daniel Snyder, Ashkon Rahbari, Benjamin Ranard, Pallavi Juneja, Dina Demner-Fushman, Noemie Elhadad
clinical notes patient country information race and ethnicity patient language information
Published: Oct. 21, 2024. Version: 1.0.0
Database Restricted Access
VinDr-SpineXR: A large annotated medical image dataset for spinal lesions detection and classification from radiographs
Hieu Huy Pham, Hieu Nguyen Trung, Ha Quy Nguyen
Published: Aug. 24, 2021. Version: 1.0.0
Database Credentialed Access
National Institutes of Health Stroke Scale (NIHSS) Annotations for the MIMIC-III Database
Jiayang Wang, Xiaoshuo Huang, Lin Yang, Jiao Li
Published: Jan. 25, 2021. Version: 1.0.0
Database Credentialed Access
Phenotype Annotations for Patient Notes in the MIMIC-III Database
Edward Moseley, Leo Anthony Celi, Joy Wu, Franck Dernoncourt
patient classification natural language processing
Published: March 5, 2020. Version: 1.20.03
Database Open Access
Brno University of Technology ECG Signal Database with Annotations of P Wave (BUT PDB)
Lucie Maršánová, Andrea Nemcova, Radovan Smisek, Lukas Smital, Martin Vitek
Published: Jan. 19, 2021. Version: 1.0.0
Visualize waveformsDatabase Open Access
Hillel Yaffe Glaucoma Dataset (HYGD): A Gold-Standard Annotated Fundus Dataset for Glaucoma Detection
Or Abramovich, Hadas Pizem, Jonathan Fhima, Eran Berkowitz, Ben Gofrit, Jan Van Eijgen, Eytan Blumenthal, Joachim Behar
ophthalmology retina dfi gold-standard gon fundus glaucoma
Published: June 3, 2025. Version: 1.0.0
Database Credentialed Access
Medical Expert Annotations of Unsupported Facts in Doctor-Written and LLM-Generated Patient Summaries
Stefan Hegselmann, Shannon Shen, Florian Gierse, Monica Agrawal, David Sontag, Xiaoyi Jiang
Published: April 30, 2025. Version: 1.0.1