Resources


Database Credentialed Access

Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries

Melissa Poulsen, Vanessa Troiani, Philip Freda, Danielle Mowery, Anahita Davoudi

The database contains a corpus of annotated data from the MIMIC-III Critical Care Database from a study that aimed to develop and apply an annotation schema to characterize opioid use disorder and related contextual factors.

clinical notes substance use opioid use disorder natural language processing

Published: Feb. 8, 2023. Version: 1.0.0

Database Restricted Access

KURIAS-ECG: a 12-lead electrocardiogram database with standardized diagnosis ontology

Hakje Yoo, Yunjin Yum, Soowan Park, Jeong Moon Lee, Moonjoung Jang, Yoojoong Kim, Jong-Ho Kim, Hyun-Joon Park, Kap Su Han, Jae Hyoung Park, Hyung Joon Joo

The KURIAS-ECG database is a high-quality 12-lead ECG DB including standard vocabulary (SNOMED CT, OMOP-CDM), and ECG diagnoses of our DB are grouped into 10 diagnoses by applying the minnesota code.

snomed 12-lead minnesota ecg

Published: Nov. 8, 2021. Version: 1.0

Database Credentialed Access

Phenotype Annotations for Patient Notes in the MIMIC-III Database

Edward Moseley, Leo Anthony Celi, Joy Wu, Franck Dernoncourt

Clinical notes, annotated by at least two expert annotators for over ten patient phenotypes, including advanced cancer, substance abuse, and treatment non-adherence.

patient classification natural language processing

Published: March 5, 2020. Version: 1.20.03

Database Credentialed Access

INSPIRE, a publicly available research dataset for perioperative medicine

Hyung-Chul Lee, Leerang Lim

A public dataset that contains information related to surgery, anesthesia, laboratory results, medications, diagnosis, and outcomes from 50% of the patients who received surgery at Seoul National University Hospital between 2011 and 2020.

perioperative medicine surgery multi-center open dataset

Published: Nov. 3, 2023. Version: 1.1

Challenge Credentialed Access

CXR-LT: Multi-Label Long-Tailed Classification on Chest X-Rays

Gregory Holste, Song Wang, Ajay Jaiswal, Yuzhe Yang, Mingquan Lin, Yifan Peng, Atlas Wang

CXR-LT 2023 was a challenge for long-tailed, multi-label thorax disease classification on chest X-rays, held in conjunction with the ICCV 2023 workshop, CVAMD. This page contains extended long-tailed versions of the MIMIC-CXR-JPG v2.0.0 dataset.

Published: Sept. 28, 2023. Version: 1.1.0

Challenge Open Access

Paroxysmal Atrial Fibrillation Events Detection from Dynamic ECG Recordings: The 4th China Physiological Signal Challenge 2021

Xingyao Wang, Caiyun Ma, Xiangyu Zhang, Hongxiang Gao, Gari D. Clifford, Chengyu Liu

CPSC2021 for paroxysmal atrial fibrillation events detection.

event detection paroxysmal atrial fibrillation

Published: June 21, 2021. Version: 1.0.0

Visualize waveforms

Database Open Access

Siena Scalp EEG Database

Paolo Detti

The database consists of EEG recordings of 14 epileptic patients acquired at the Unit of Neurology and Neurophysiology of the University of Siena. Subjects include 9 males (ages 25-71) and 5 females (ages 20-58).

Published: Aug. 11, 2020. Version: 1.0.0

Visualize waveforms

Database Credentialed Access

A Brazilian Multilabel Ophthalmological Dataset (BRSET)

Luis Filipe Nakayama, Mariana Goncalves, Lucas Zago Ribeiro, Helen Santos, Daniel Ferraz, Fernando Malerbi, Leo Anthony Celi, Caio Regatieri

This is the first Brazilian Multilabel Ophthalmological Dataset with demographic information and retinal photos labeled images according to anatomical parameters, quality control, and presumed diagnosis.

dataset ophthalmology retina

Published: March 8, 2023. Version: 1.0.0

Database Restricted Access

Multitaper spectra recorded during GABAergic anesthetic unconsciousness

John Abel, Marcus Badgeley, Benyamin Meschede-Krasa, Gabe Schamberg, Indie Garwood, Kimaya Lecamwasam, Sourish Chakravarty, David Zhou, Matt Keating, Patrick Purdon, Emery Brown

EEG power spectra recorded during anesthesia

eeg electroencephalography unconsciousness anesthesia

Published: April 19, 2021. Version: 1.0.0

Database Contributor Review

CARMEN-I: A resource of anonymized electronic health records in Spanish and Catalan for training and testing NLP tools

Eulalia Farre Maduell, Salvador Lima-Lopez, Santiago Andres Frid, Artur Conesa, Elisa Asensio, Antonio Lopez-Rueda, Helena Arino, Elena Calvo, Maria Jesús Bertran, Maria Angeles Marcos, Montserrat Nofre Maiz, Laura Tañá Velasco, Antonia Marti, Ricardo Farreres, Xavier Pastor, Xavier Borrat Frigola, Martin Krallinger

CARMEN-I is a Spanish corpus of 2,000 clinical records from Hospital Clínic, Barcelona. It covers COVID-19 patients and comorbidities, serving as a resource for training clinical NLP models and researchers in NLP applied to clinical documents.

de-identification anonymization clinical ner

Published: Nov. 2, 2023. Version: 1.0