Resources


Software Open Access

Multiscale Poincare Plots

Poincaré delay maps are widely used in the analysis of cardiac interbeat interval (RR) dynamics. To facilitate visualization of the structure of these complex time series, we introduced a methodology called multiscale Poincaré (MSP) pl…

poincare visualization

Published: April 12, 2016. Version: 1.0.0

Software Open Access

Data Chromatix

Analysis of biomedical time series plays a key role in clinical management and basic investigation. However, most conventional monitors streaming data in real-time show only the most recent values, not referenced to past dynamics. The proposed visua…

visualization

Published: Nov. 9, 2015. Version: 1.0.0

Database Restricted Access

Endoscapes2023, A Critical View of Safety and Surgical Scene Segmentation Dataset for Laparoscopic Cholecystectomy

Pietro Mascagni, Deepak Alapatt, Aditya Murali, Armine Vardazaryan, Alain Garcia Vazquez, Nariaki Okamoto, Guido Costamagna, Didier Mutter, Jacques Marescaux, Bernard Dallemagne, Nicolas Padoy

Endoscapes2023 enables the development of models for object detection, semantic and instance segmentation, and Critical View of Safety (CVS) prediction, contributing to safe laparoscopic cholecystectomy.

surgical safety computer assisted interventions semantic segmentation surgical data science medical imaging analysis

Published: Dec. 11, 2024. Version: 1.0.0

Database Credentialed Access

ENCoDE, mEasuring skiN Color to correct pulse Oximetry DisparitiEs: skin tone and clinical data from a prospective trial on acute care patients.

Sicheng Hao, Katelyn Dempsey, João Matos, Mahmoud Alwakeel, Jared Houghtaling, An Kwok Wong

A prospective collected EHR-linked skin tone measurements database in OMOP format with emphasis on pulse oximetry disparities.

Published: Aug. 22, 2024. Version: 1.0.0

Database Credentialed Access

EHRXQA: A Multi-Modal Question Answering Dataset for Electronic Health Records with Chest X-ray Images

Seongsu Bae, Daeun Kyung, Jaehee Ryu, Eunbyeol Cho, Gyubok Lee, Sunjun Kweon, Jungwoo Oh, Lei JI, Eric Chang, Tackeun Kim, Edward Choi

We present EHRXQA, the first multi-modal EHR QA dataset combining structured patient records with aligned chest X-ray images. EHRXQA contains a comprehensive set of QA pairs covering image-related, table-related, and image+table-related questions.

question answering benchmark evaluation visual question answering electronic health records multi-modal question answering deep learning ehr question answering semantic parsing machine learning chest x-ray

Published: July 23, 2024. Version: 1.0.0

Database Open Access

A Comprehensive Dataset of Pattern Electroretinograms for Ocular Electrophysiology Research: The PERG-IOBA Dataset

Itziar Fernández, Ruben Cuadrado Asensio, Yolanda Larriba, Cristina Rueda, Rosa M Coco-Martin

336 CSV records with 1354 PERG responses (microvolts) from 304 subjects at IOBA. Includes age (years), gender, diagnoses, and visual acuity in logMar scale.

Published: Jan. 19, 2024. Version: 1.0.0

Database Restricted Access

MIMIC-Eye: Integrating MIMIC Datasets with REFLACX and Eye Gaze for Multimodal Deep Learning Applications

Chihcheng Hsieh, Chun Ouyang, Jacinto C Nascimento, Joao Pereira, Joaquim Jorge, Catarina Moreira

MIMIC-Eye: Integrating MIMIC Datasets with REFLACX and Eye Gaze for Multimodal Deep Learning Applications

Published: March 23, 2023. Version: 1.0.0

Database Credentialed Access

Chest X-ray Dataset with Lung Segmentation

Wimukthi Indeewara, Mahela Hennayake, Kasun Rathnayake, Thanuja Ambegoda, Dulani Meedeniya

CXLSeg dataset: Chest X-ray with Lung Segmentation, a comparatively large dataset of segmented Chest X-ray radiographs based on the MIMIC-CXR dataset. This contains segmentation results of 243,324 frontal view images and corresponding masks.

segmentation medical reports u-net chest radiographs mimic-cxr chest x-ray

Published: Feb. 8, 2023. Version: 1.0.0

Database Credentialed Access

Chest ImaGenome Dataset

Joy Wu, Nkechinyere Agu, Ismini Lourentzou, Arjun Sharma, Joseph Paguio, Jasper Seth Yao, Edward Christopher Dee, William Mitchell, Satyananda Kashyap, Andrea Giovannini, Leo Anthony Celi, Tanveer Syeda-Mahmood, Mehdi Moradi

The Chest ImaGenome dataset is a scene graph dataset with additional chronological comparison relations for chest X-rays. It is automatically derived from the MIMIC-CXR dataset. A manually annotated gold standard is also available for 500 patients.

scene graph visual dialogue object detection semantic reasoning bounding box knowledge graph explainability reasoning relation extraction chest cxr disease progression multimodal radiology visual question answering deep learning machine learning chest x-ray

Published: July 13, 2021. Version: 1.0.0

Database Open Access

Body Sway When Standing and Listening to Music Modified to Reinforce Virtual Reality Environment Motion

Jefferson Streepey, Shaquitta Dent

This data were intended to show that music manipulated to match VR motion provided by an Oculus Rift head mounted display increased body sway when standing still.

Published: Jan. 26, 2021. Version: 1.0.0