Resources


Database Restricted Access

Community-Acquired Pneumonia, Endotypes and Phenotypes (NACef): Prospective, observational cohort study of Translational Medicine

Luis Felipe Reyes, Natalia Sanabria-Herrera, Esteban Garcia Gallo

Community-Acquired Pneumonia (CAP) poses a significant health risk, linked to high in-hospital morbidity and mortality rates. The dataset includes clinical details of 768 CAP patients at Clinica Universidad de La Sabana, Colombia.

Published: June 9, 2025. Version: 2.0.0

Database Open Access

Hillel Yaffe Glaucoma Dataset (HYGD): A Gold-Standard Annotated Fundus Dataset for Glaucoma Detection

Or Abramovich, Hadas Pizem, Jonathan Fhima, Eran Berkowitz, Ben Gofrit, Jan Van Eijgen, Eytan Blumenthal, Joachim Behar

HYGD is a rigorously annotated fundus image dataset with gold-standard clinical labels designed to improve and benchmark deep learning models for accurate glaucoma detection.

ophthalmology retina dfi gold-standard gon fundus glaucoma

Published: June 3, 2025. Version: 1.0.0

Database Open Access

bigP3BCI: An Open, Diverse and Machine Learning Ready P300-based Brain-Computer Interface Dataset

Boyla Mainsah, Chance Fleeting, Thomas Balmat, Eric Sellers, Leslie Collins

A collection of data from P300-based brain-computer interface studies.

brain-computer interface electroencephalography ieee p2731 working group standard amyotrophic lateral sclerosis p300 speller p300 event related potential oddball paradigm error-related potential

Published: May 19, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext Cardiac Disease

Jiawei Cao, Sendong Zhao

The subset of the MIMIC-IV dataset includes the examination results and diagnostic information of 4,761 cardiac disease patients. The examination results for each patient are listed separately as evidence for the final diagnosis.

Published: May 6, 2025. Version: 1.0.0

Database Credentialed Access

FDTooth: Intraoral Photographs and Cone-Beam Computed Tomography Images for Fenestration and Dehiscence Detection

Yanqi Yang, Xiaomeng LI, Keyuan Liu, Marawan Elbatel

FDTooth is a dataset containing intraoral photographs and cone-beam computed tomography (CBCT) images with annotations for automated detection of fenestration and dehiscence in anterior teeth.

Published: May 5, 2025. Version: 1.0.0

Database Credentialed Access

MeDiSumQA: Patient-Oriented Question-Answer Generation from Discharge Letters

Amin Dada, Osman Alperen Koras, Marie Bauer, Amanda Butler, Kaleb Smith, Jens Kleesiek, Julian Friedrich

MeDiSumQA is a dataset of patient-oriented QA pairs from MIMIC-IV discharge summaries, designed to evaluate LLMs in generating safe, patient-friendly medical responses for clinical QA and healthcare communication.

Published: May 5, 2025. Version: 1.0.0

Database Open Access

Minute level step counts and physical activity data from the National Health and Nutrition Examination Survey (NHANES) 2011-2014

Lily Koffman, John Muschelli

Minute level step counts obtained from five step counting algorithms for raw accelerometry data, and minute level Activity Counts, MIMS, wear predictions, and wear flags for all participants who wore accelerometers in NHANES 2011-2014.

accelerometry physical activity steps nhanes

Published: May 5, 2025. Version: 1.0.1

Database Restricted Access

DREAMT: Dataset for Real-time sleep stage EstimAtion using Multisensor wearable Technology

Ke Wang, Jiamu Yang, Ayush Shetty, Jessilyn Dunn

We present high resolution wearable device multichannel data along with clinical labeled and recorded sleep stage and polysomnography (PSG) data from 100 sleep abnormal patients with sleep apnea.

sleep disorders wearable biomedical time series classification

Published: April 30, 2025. Version: 2.1.0

Database Restricted Access

MIMIC-IV-Ext-Apixaban-Trial-Criteria-Questions

Elizabeth Woo, Michael Craig Burkhart, Emily Alsentzer, Brett Beaulieu-Jones

We created 23 questions resembling eligibility criteria from the apixaban clinical trial and evaluated them on a random sample of 100 patient notes from MIMIC-IV. We release the 2300 total question-answer pairs as a dataset here.

clinical q and a evaluation set clinical trial eligibility

Published: April 30, 2025. Version: 1.0.0

Database Credentialed Access

Medical Expert Annotations of Unsupported Facts in Doctor-Written and LLM-Generated Patient Summaries

Stefan Hegselmann, Shannon Shen, Florian Gierse, Monica Agrawal, David Sontag, Xiaoyi Jiang

Annotations for unsupported facts in 100 original MIMIC patient summaries (discharge instructions) and hallucinations in 100 Large Language Model (LLM) generated patient summaries labeled by two medical experts.

Published: April 30, 2025. Version: 1.0.1