Resources


Software Open Access

Vital File Web Viewer: A Browser-Based Tool for Viewing High-Resolution Vital Signs Data

Eunsun Rachel Lee, Hyung-Chul Lee

A standalone, browser-based viewer for .vital files that enables interactive visualization of high-resolution vital signs data without server-side components.

vitaldb vital file

Published: Sept. 1, 2025. Version: 1.0.0

Database Open Access

MIMIC-IV Clinical Database Demo on FHIR

Alex Bennett, Hannes Ulrich, Joshua Wiedekopf, et al.

The MIMIC-IV Clinical Database Demo on FHIR is a 100 patient subset of the MIMIC-IV v2.2 and MIMIC-IV-ED v2.2 clinical databases converted into the Fast Healthcare Interoperability Resources (FHIR) format.

fhir electronic health records mimic

Published: Aug. 27, 2025. Version: 2.1.0

Database Restricted Access

Community-Acquired Pneumonia, Endotypes and Phenotypes (NACef): Prospective, observational cohort study of Translational Medicine

Natalia Sanabria-Herrera, Esteban Garcia Gallo, Luis Felipe Reyes

Community-Acquired Pneumonia (CAP) poses a significant health risk, linked to high in-hospital morbidity and mortality rates. The dataset includes clinical details of 768 CAP patients at Clinica Universidad de La Sabana, Colombia.

Published: Aug. 21, 2025. Version: 2.0.1

Database Credentialed Access

CXR-Align: A Benchmark for CXR-Report Alignment with Negations

Hanbin Ko

CXR-Align is a benchmark dataset created to evaluate vision-language models' capability to interpret negations in chest X-ray (CXR) reports, featuring systematically modified reports from MIMIC-CXR.

Published: Aug. 21, 2025. Version: 1.0.0

Database Credentialed Access

Immunosuppressive Condition and Medication Annotations for Admission Notes in the MIMIC-III Database

Vijeeth Guggilla, Melissa Bak, Mengjia Kang, et al.

This database contains 200 MIMIC-III admission notes with adjudicated labels for histories of various immunosuppressive conditions and usage of various immunosuppressive medications.

Published: Aug. 4, 2025. Version: 1.0.0

Database Credentialed Access

SCRIPT CarpeDiem Dataset: demographics, outcomes, and per-day clinical parameters for critically ill patients with suspected pneumonia

Nikolay Markov, Catherine A Gao, Thomas Stoeger, et al.

SCRIPT seeks to delineate the host/pathogen interactions during pneumonia using multiomic analysis of bronchoalveolar lavage fluid joined with clinical data and physician adjudication.

Published: Aug. 4, 2025. Version: 1.8.0

Database Credentialed Access

Annotated Social Determinants of Health Dataset for Adverse Pregnancy Outcomes

Nidhi Soley, MaKhaila Bentil, Jash Shah, et al.

This project provides a manually annotated dataset of social determinants of health—social support, occupation, and substance use—linked to pregnancy outcomes, extracted from MIMIC-III and MIMIC-IV discharge summary notes.

Published: Aug. 4, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-Ext-CXR-QBA: A Structured, Tagged, and Localized Visual Question Answering Dataset with Question-Box-Answer Triplets and Scene Graphs for Chest X-ray Images

Philip Müller, Friederike Jungmann, Georgios Kaissis, et al.

We present a large-scale CXR VQA dataset derived from MIMIC-CXR with 42M QA pairs, featuring hierarchical answers, bounding boxes, and structured tags. We generated QA-pairs using LLM-based extraction from radiology reports and localization models.

chest x-rays vqa localization scene graphs

Published: July 22, 2025. Version: 1.0.0

Challenge Credentialed Access

SNOMED CT Entity Linking Challenge

Will Hardman, Mark Banks, Rory Davidson, et al.

272 discharge notes from the MIMIC-IV-Note dataset annotated with SNOMED CT concepts.

snomed entity linking clinical annotation

Published: July 22, 2025. Version: 1.1.0

Database Open Access

Wearable Device Dataset from Induced Stress and Structured Exercise Sessions

Andrea Hongn, Facundo Bosch, Lara Prado, et al.

Physiological signals(Electrodermal Activity,Blood Volume Pulse, Heart Rate, Temperature,etc) from 36 healthy volunteers collected during structured acute stress induction and aerobic/anaerobic exercise sessions using the Empatica E4 wearable device.

exercise stress wearable aerobic anaerobic

Published: June 24, 2025. Version: 1.0.1