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Database Restricted Access

LATTE-CXR: Locally Aligned TexT and imagE, Explainable dataset for Chest X-Rays

Elham Ghelichkhan, Tolga Tasdizen

This dataset includes bounding box-statement pairs for chest X-ray images, derived from radiologists’ eye-tracking data (for explainability) and annotations, for local visual-language models.

eye-tracking chest x-ray dataset automatically generated dataset caption-guided object detection image captioning with region-level description grounded radiology report generation phrase grounding xai multi-modal learning local visual-language models localization

Published: Feb. 4, 2025. Version: 1.0.0

Database Restricted Access

Application of Med-PaLM 2 in the refinement of MIMIC-CXR labels

Kendall Park, Rory Sayres, Andrew Sellergren, et al.

This work further refines the labels associated with CheXpert in MIMIC-CXR-JPG 2.0.0 by filtering with Med-PaLM 2 followed by verification by manual review by three US board-certified radiologists.

mimic-cxr labels

Published: Feb. 4, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext-BHC: Labeled Clinical Notes Dataset for Hospital Course Summarization

Asad Aali, Dave Van Veen, Yamin Arefeen, et al.

This dataset presents a collection of preprocessed and labeled clinical notes derived from "MIMIC-IV-Note", and aims to facilitate the development of ML models focused on summarizing brief hospital courses (BHC) from clinical notes.

natural language processing clinical notes machine learning brief hospital course text summarization

Published: Feb. 3, 2025. Version: 1.2.0

Database Open Access

Synthetic Mention Corpora for Disease Entity Recognition and Normalization

Kuleen Sasse, John David Osborne

We present the Synthetic Mention Corpora for Disease Entity Recognition and Normalization, containing 128000 disease mentions from the UMLS disorder group, generated by an LLM. This corpus aims to improve these tasks in biomedical and clinical texts.

nlp machine learning named entity recognition data augmentation entity normalization

Published: Feb. 3, 2025. Version: 1.0.0

Database Credentialed Access

Medical-Diff-VQA: A Large-Scale Medical Dataset for Difference Visual Question Answering on Chest X-Ray Images

Xinyue Hu, Lin Gu, Qiyuan An, et al.

MIMIC-Diff-VQA provides a large-scale dataset for Difference visual question answering in medical chest x-ray images.

difference visual question answering difference vqa vqa chest x-ray visual question answering

Published: Feb. 3, 2025. Version: 1.0.1

Database Restricted Access

CXRGraph: Using Information Extraction to Normalize the Training Data for Automatic Radiology Report Generation

Yuxiang Liao, Hoisang Heung, Hantao Liu, et al.

CXRGraph is a structured radiology report dataset built upon RadGraph and tailored for the Automatic Radiology Report Generation task. It can identify more task-relevant information such as abnormalities and hallucinated prior references.

relation extraction information extraction natural language processing named entity recognition structured radiology report

Published: Feb. 3, 2025. Version: 1.0.0

Database Credentialed Access

Symile-MIMIC: a multimodal clinical dataset of chest X-rays, electrocardiograms, and blood labs from MIMIC-IV

Adriel Saporta, Aahlad Manas Puli, Mark Goldstein, et al.

A multimodal clinical dataset consisting of CXRs, ECGs, and blood labs, designed to evaluate Symile, a simple contrastive loss that accommodates any number of modalities and allows any model to produce representations for each modality.

database cxr ecg chest x-ray mimic contrastive learning model multimodal electrocardiogram

Published: Jan. 28, 2025. Version: 1.0.0

Database Restricted Access

Visual Question Answering evaluation dataset for MIMIC CXR

Timo Kohlberger, Charles Lau, Tom Pollard, et al.

This dataset provides 224 VQAs for 40 test set cases, and 111 VQAs for 23 validation set cases of the MIMIC CXR dataset.

Published: Jan. 28, 2025. Version: 1.0.0

Database Open Access

CGMacros: a scientific dataset for personalized nutrition and diet monitoring

Ricardo Gutierrez-Osuna, David Kerr, Bobak Mortazavi, et al.

CGMacros contains information from two continuous glucose monitors (CGM), food macronutrients, food photographs, physical activity, and anonymized participant demographics, anthropometric measurements and health parameters.

diabetes machine learning continuous glucose monitors obesity postprandial glucose response food macronutrients metabolic models food photographs personalized nutrition

Published: Jan. 28, 2025. Version: 1.0.0

Database Credentialed Access

SCRIPT X2B8 Dataset: per-day clinical features to model successful next-day extubation

Sam Fenske, Alec Peltekian, Mengjia Kang, et al.

This dataset contains electronic health record (EHR) data from ICU patients receiving mechanical ventilation, aggregated on a daily basis, along with annotations of intubation, extubation, tracheostomy days, and cases of failed extubation. Data can b

Published: Jan. 28, 2025. Version: 1.0.0