Resources


Software Open Access

Transformer-DeID: Deidentification of free-text clinical notes with transformers

Callandra Moore, Lucas Bulgarelli, Tom Pollard, et al.

Fine tune transformer-based neural networks to deidentify clinical text data.

deidentification neural networks transformers

Published: Nov. 2, 2023. Version: 1.0.0

Software Open Access

Transformer-DeID: Deidentification of free-text clinical notes with transformers

Callandra Moore, Lucas Bulgarelli, Tom Pollard, et al.

Fine tune transformer-based neural networks to deidentify clinical text data.

deidentification neural networks transformers

Published: Nov. 2, 2023. Version: 1.0.0

Database Credentialed Access

Annotated MIMIC-IV discharge summaries for a study on deidentification of names

Shulammite Lim, Yuxin Xiao, Alistair Johnson, et al.

Annotated MIMIC-IV discharge summaries used to explore deidentification of names

deidentification fairness

Published: July 5, 2023. Version: 1.0

Database Credentialed Access

Annotated MIMIC-IV discharge summaries for a study on deidentification of names

Shulammite Lim, Yuxin Xiao, Alistair Johnson, et al.

Annotated MIMIC-IV discharge summaries used to explore deidentification of names

deidentification fairness

Published: July 5, 2023. Version: 1.0

Database Open Access

Hillel Yaffe Glaucoma Dataset (HYGD): A Gold-Standard Annotated Fundus Dataset for Glaucoma Detection

Or Abramovich, Hadas Pizem, Jonathan Fhima, et al.

HYGD is a rigorously annotated fundus image dataset with gold-standard clinical labels designed to improve and benchmark deep learning models for accurate glaucoma detection.

ophthalmology retina dfi gold-standard gon fundus glaucoma

Published: June 3, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Note: Deidentified free-text clinical notes

Alistair Johnson, Tom Pollard, Steven Horng, et al.

Deidentified free-text clinical notes for patients in the MIMIC-IV Clinical Database.

deidentification critical care natural language processing clinical notes electronic health record mimic

Published: Jan. 6, 2023. Version: 2.2

Software Open Access

edf-anonymize

edf-anonymize reads an EDF or EDF+ file (input), writing an anonymized copy of it as output.

phi deidentification anonymization

Published: May 17, 2010. Version: 1.0.0

Software Open Access

De-Identification Software Package

The deid software package includes code and dictionaries for automated location and removal of protected health information (PHI) in free text from medical records.

phi deidentification anonymization

Published: Dec. 18, 2007. Version: 1.1

Database Credentialed Access

MIMIC-IV-Note: Deidentified free-text clinical notes

Alistair Johnson, Tom Pollard, Steven Horng, et al.

Deidentified free-text clinical notes for patients in the MIMIC-IV Clinical Database.

deidentification critical care natural language processing clinical notes electronic health record mimic

Published: Jan. 6, 2023. Version: 2.2

Software Open Access

edf-anonymize

edf-anonymize reads an EDF or EDF+ file (input), writing an anonymized copy of it as output.

phi deidentification anonymization

Published: May 17, 2010. Version: 1.0.0