Resources
Software Open Access
De-Identification Software Package
The deid
software package includes code and dictionaries for automated location and removal of protected health information (PHI) in free text from medical records.
phi deidentification anonymization
Published: Dec. 18, 2007. Version: 1.1
Database Credentialed Access
MIMIC-CXR Database
Alistair Johnson, Tom Pollard, Roger Mark, Seth Berkowitz, Steven Horng
computer vision chest x-rays natural language processing radiology machine learning mimic
Published: July 23, 2024. Version: 2.1.0
Database Credentialed Access
MIMIC-CXR-JPG - chest radiographs with structured labels
Alistair Johnson, Matthew Lungren, Yifan Peng, Zhiyong Lu, Roger Mark, Seth Berkowitz, Steven Horng
computer vision radiology deep learning chest x-ray mimic
Published: March 12, 2024. Version: 2.1.0
Database Credentialed Access
RadCoref: Fine-tuning coreference resolution for different styles of clinical narratives
Yuxiang Liao, Hantao Liu, Irena Spasic
natural language processing coreference resolution radiology
Published: Jan. 30, 2024. Version: 1.0.0
Database Credentialed Access
Annotation dataset of social determinants of health from MIMIC-III Clinical Care Database
Marco Guevara, Shan Chen, Spencer Thomas, Danielle Bitterman
natural language processing social determinants of health
Published: Jan. 24, 2024. Version: 1.0.1
Database Credentialed Access
CXR-PRO: MIMIC-CXR with Prior References Omitted
Vignav Ramesh, Nathan Chi, Pranav Rajpurkar
generation free-text radiology reports references to priors retrieval large language models
Published: Nov. 23, 2022. Version: 1.0.0
Database Credentialed Access
Learning to Ask Like a Physician: a Discharge Summary Clinical Questions (DiSCQ) Dataset
Eric Lehman
question generation question answering machine learning
Published: July 28, 2022. Version: 1.0
Model Credentialed Access
Clinical BERT Models Trained on Pseudo Re-identified MIMIC-III Notes
Eric Lehman, Sarthak Jain, Karl Pichotta, Yoav Goldberg, Byron Wallace
Published: April 28, 2021. Version: 1.0.0
Database Credentialed Access
Deidentified Medical Text
Margaret Douglass, Bill Long, George Moody, Peter Szolovits, Li-wei Lehman, Roger Mark, Gari D. Clifford
medical text nursing notes hipaa de-identification
Published: Dec. 18, 2007. Version: 1.0
Software Open Access
De-Identification Software Package
The deid
software package includes code and dictionaries for automated location and removal of protected health information (PHI) in free text from medical records.
phi deidentification anonymization
Published: Dec. 18, 2007. Version: 1.1