Resources


Challenge Credentialed Access

ShAReCLEF eHealth 2013: Natural Language Processing and Information Retrieval for Clinical Care

Danielle Mowery

2013 ShARe/CLEF eHealth Evaluation Lab: Natural Language Processing and Information Retrieval for Clinical Care (Tasks 1 and 2).

natural language processing

Published: Feb. 15, 2013. Version: 1.0

Challenge Credentialed Access

ShAReCLEF eHealth Evaluation Lab 2014 (Task 2): Disorder Attributes in Clinical Reports

Danielle Mowery

The ShARe/CLEF eHealth 2014 Challenge (Task 2) on Disorder Attributes in Clinical Reports

Published: Nov. 1, 2013. Version: 1.0

Database Credentialed Access

Annotation dataset of problematic opioid use and related contexts from MIMIC-III Critical Care Database discharge summaries

Melissa Poulsen, Vanessa Troiani, Philip Freda, et al.

The database contains a corpus of annotated data from the MIMIC-III Critical Care Database from a study that aimed to develop and apply an annotation schema to characterize opioid use disorder and related contextual factors.

opioid use disorder substance use natural language processing clinical notes

Published: Feb. 8, 2023. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Note: Deidentified free-text clinical notes

Alistair Johnson, Tom Pollard, Steven Horng, et al.

Deidentified free-text clinical notes for patients in the MIMIC-IV Clinical Database.

deidentification critical care natural language processing clinical notes electronic health record mimic

Published: Jan. 6, 2023. Version: 2.2

Database Credentialed Access

Immunosuppressive Condition and Medication Annotations for Admission Notes in the MIMIC-III Database

Vijeeth Guggilla, Melissa Bak, Mengjia Kang, et al.

This database contains 200 MIMIC-III admission notes with adjudicated labels for histories of various immunosuppressive conditions and usage of various immunosuppressive medications.

Published: Aug. 4, 2025. Version: 1.0.0

Database Credentialed Access

MIMIC-III-Ext-Notes

Darren Liu, Monique Bouvier, Delgersuren Bold, et al.

We evaluated general large language models' performance in clinical information extraction on MIMIC-III notes.

Published: Feb. 27, 2026. Version: 1.0.0

Database Credentialed Access

MIMIC-IV-Ext Cardiac Disease

Jiawei Cao, Sendong Zhao

The subset of the MIMIC-IV dataset includes the examination results and diagnostic information of 4,761 cardiac disease patients. The examination results for each patient are listed separately as evidence for the final diagnosis.

Published: May 6, 2025. Version: 1.0.0

Database Credentialed Access

MedNLI for Shared Task at ACL BioNLP 2019

Chaitanya Shivade

Data for the MedNLI Shared Task at the 2019 ACL BioNLP 2019 Workshop on Biomedical Language Processing

natural language inference recognizing textual entailment mimic

Published: Nov. 28, 2019. Version: 1.0.1

Database Credentialed Access

RadGraph-XL: A Large-Scale Expert-Annotated Dataset for Entity and Relation Extraction from Radiology Reports

Jean-Benoit Delbrouck

RadGraph-XL is a large, expert-annotated dataset of 2,300 radiology reports covering multiple modalities and anatomies. It enables accurate extraction of clinical entities and relations for downstream medical AI tasks.

Published: Sept. 12, 2025. Version: 1.0.0

Model Credentialed Access

Clinical-T5: Large Language Models Built Using MIMIC Clinical Text

Eric Lehman, Alistair Johnson

We train a T5-Base and T5-Large from scratch on MIMIC-III and MIMIC-IV. Additionally, we further pretrain T5-Base and SciFive on notes from MIMIC. We release these model weights on PhysioNet.

Published: Jan. 25, 2023. Version: 1.0.0