Resources
156 results for "MIMIC"
Database
Credentialed Access
BOLD, a blood-gas and oximetry linked dataset
Pulse oximeters measure peripheral arterial oxygen saturation (SpO2) noninvasively, while the gold standard involves arterial blood gas measurement (SaO2). There are known racial and ethnic disparities in their performance. BOLD is a new comprehensi…
Database
Credentialed Access
CLIP: A Dataset for Extracting Action Items for Physicians from Hospital Discharge Notes
We created a dataset of clinical action items annotated over MIMIC-III. This dataset, which we call CLIP, is annotated by physicians and covers 718 discharge summaries, representing 107,494 sentences. Annotations were collected as character-level sp…
Database
Credentialed Access
EHR-ReasonCon: Reasoning-Intensive Consistency Verification Between Clinical Notes and Structured Tables in Electronic Health Records
Electronic Health Records (EHRs) combine structured data, such as medications and laboratory measurements, with unstructured clinical notes describing patient conditions and clinical events. Although these two data types provide complementary inform…
Database
Open Access
CheXmask-U: Uncertainty Estimation for Landmark-Based Anatomical Segmentation Masks in Chest X-ray Images
We present an extended version of the CheXmask dataset, augmenting the original anatomical segmentation masks of chest X-rays with node-wise uncertainty estimates. The dataset retains the comprehensive coverage of five public sources—ChestX-ray8, Ch…
Database
Credentialed Access
Insulin4RL: Real-Time Insulin Infusions For Offline Reinforcement Learning
Offline reinforcement learning (RL) holds promise for improving healthcare decision-making. However, most existing approaches rely on discretising patient trajectories into strictly regular time intervals. This is done to improve compatibility with …
Database
Credentialed Access
Clinical Time Series Datasets for Trajectory Flow Matching Evaluation: ICU Sepsis, ICU Cardiac Arrest, and ICU GIB Cohorts
This resource comprises three clinical time series datasets used in the paper Trajectory Flow Matching with Applications to Clinical Time Series Modeling to evaluate models for handling irregularly sampled data in critical care settings. The ICU Sep…
Challenge
Credentialed Access
SNOMED CT Entity Linking Challenge
This challenge, sponsored by SNOMED International, seeks to advance the development of Entity Linking models that operate on unstructured clinical texts. Participants in the challenge will train entity linking models using a subset of MIMIC-IV-Note …
Database
Credentialed Access
Lunguage: A Benchmark for Structured and Sequential Chest X-ray Interpretation
Radiology reports convey detailed clinical observations and capture diagnostic reasoning that evolves over time. However, existing evaluation methods are limited to single-report settings and rely on coarse metrics that fail to capture fine-grained …
fine-grained structured reports
attribute-level clinical reasoning
medical text structuring
longitudinal clinical reasoning
chest x-ray report parsing
medical information structuring
benchmark dataset for radiology report
medical information extraction
structured radiology reports
temporal relation extraction
radiology report benchmarking
longitudinal clinical understanding
Database
Credentialed Access
EchoGraph-annotated ECHO-NOTE2NUM examples
This repository releases the EchoGraph-annotated ECHO-NOTE2NUM dataset, containing 45,794 echocardiography reports with comprehensive entity and relation annotations. Each report from the ECHO-NOTE2NUM dataset has been automatically annotated using …
Database
Contributor Review
ER-REASON: A Benchmark Dataset for LLM-Based Clinical Reasoning in the Emergency Room
The ER-Reason dataset is a benchmark designed to evaluate LLM-based clinical reasoning and decision-making in the emergency room (ER), a high-stakes setting where clinicians make rapid, consequential decisions across diverse patient presentations an…